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Commit 632814ba authored by ac_fx's avatar ac_fx
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draw_ssf_ncd

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% load('agne_72_8bpp.mat')
ROOT = '/g/leverjs/Olivier/Agne/march_2023_20x';
flist = dir(fullfile(ROOT,'*.LEVER'));
function [csf_mean,csf_std] = draw_ssf_ncd(ROOT,classList,A,K)
classList = get_ssClasses(flist);
flist = dir(fullfile(ROOT,'*.LEVER'));
[classUnique,ia,ic]= unique(classList);
idxTrue = ic;
% targetClass = {'AKT1_E17K','WT','PIK3CA_E545K'}
% idx = find(cellfun(@(x) ~isempty(find(strcmp(targetClass,x))),className));
% A=d(idx,idx);
% className = className(idx);
A = d;
K=6;
[idx,Y] = Cluster.SpectralCluster(A,K);
[csf_mean, csf_std] = CSF.csf_spatial(Y,idxTrue)
[csf_mean, csf_std] = CSF.csf_spatial(Y,idxTrue);
% Y = tsne(Y,'Algorithm','exact','NumDimensions',3);
clf;hold off;
......
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