From 632814ba00297e6afa6b83fd07fa8a0e5d81834b Mon Sep 17 00:00:00 2001
From: ac_fx <arc334@drexel.edu>
Date: Mon, 27 Nov 2023 08:35:01 -0500
Subject: [PATCH] draw_ssf_ncd
---
matlab/+SSF/draw_ssf_ncd.m | 14 +++-----------
1 file changed, 3 insertions(+), 11 deletions(-)
diff --git a/matlab/+SSF/draw_ssf_ncd.m b/matlab/+SSF/draw_ssf_ncd.m
index 91e362ab..b58fff82 100644
--- a/matlab/+SSF/draw_ssf_ncd.m
+++ b/matlab/+SSF/draw_ssf_ncd.m
@@ -1,20 +1,12 @@
-% load('agne_72_8bpp.mat')
-ROOT = '/g/leverjs/Olivier/Agne/march_2023_20x';
-flist = dir(fullfile(ROOT,'*.LEVER'));
+function [csf_mean,csf_std] = draw_ssf_ncd(ROOT,classList,A,K)
-classList = get_ssClasses(flist);
+flist = dir(fullfile(ROOT,'*.LEVER'));
[classUnique,ia,ic]= unique(classList);
idxTrue = ic;
-% targetClass = {'AKT1_E17K','WT','PIK3CA_E545K'}
-% idx = find(cellfun(@(x) ~isempty(find(strcmp(targetClass,x))),className));
-% A=d(idx,idx);
-% className = className(idx);
-A = d;
-K=6;
[idx,Y] = Cluster.SpectralCluster(A,K);
-[csf_mean, csf_std] = CSF.csf_spatial(Y,idxTrue)
+[csf_mean, csf_std] = CSF.csf_spatial(Y,idxTrue);
% Y = tsne(Y,'Algorithm','exact','NumDimensions',3);
clf;hold off;
--
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