Contents
GLOBAL VARIABLES
| Variable |
Class |
Description |
| CONSTANTS |
struct |
List of Values and parameters universal to the Dataset |
| CellFamilies |
struct |
Struct containing information associating multiple TRACKS linked by mitosis |
| CellHulls |
struct |
Struct containing the values of each hull, the results of segmentation |
| CellTracks |
struct |
Struct containing information associating multiple HULLS linked by the tracker |
KEY FUNCTIONS
| Package Name |
Description |
| Load.GetSupportedCellTypes |
Adds the segmentation algorithms to list for the user |
| UI.Cells |
Renders the Figure that shows the image and the Hull structures |
| UI.Trees |
Renders the Figure that shows the lineage and fluorscent statistic |
FUNCTION PACKAGES
| Package Name |
Description |
| assign |
Rectangular assignment library |
| Dev |
|
| Editor |
|
| Error |
Functions that calculate the error values in segmentation and tracking |
| Families |
Functions that create and manage the fields in CellFamilies
|
| Helper |
Misc Functions useful for developer activities on LEVER |
| Hulls |
Functions that create and manage the fields in CellHulls
|
| Load |
Set of functions that open and manage the data stored .mat files |
| matlab_bgl |
Matlab Boost Graph Library bindings |
| Segmentation |
Functions that operate the Segmentor, the algorithms that creates hulls from each raw image |
| Tracker |
Functions that operate the tracker, the algorithms that associate hulls over time |
| Tracks |
Functions that create and manage the fields in CellTracks
|
| UI |
Functions that control the creation and editing of the UI |
See More
Important Definitions
Important terms in LEVER such as
Segmentation,
Multitemporial Tracking and
Lineaging