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Created with Raphaël 2.2.013OctBug fixes for UI code.mKymoUImKymoUIAdded matlab_bgl dependencies for mKymoUI code.Added mKymoUI matlab code.Rearranged files into mKymoUI folder structure (also more like LEVER).Phantom-related files, used to generate test and create movies/kymos for phantom data sets.make-phantommake-phantomAdded in some missed dependencies for the old code.mastermasterBeginnings of mKymoUI code.Old segmentation fixes.Removed buggy conditional from patching code, not as efficient, but correctRewrote axon segmentation and tracking to have data structures similar to LEVer.Renamed Tracker Solution/ProjectRandom fixes and added extent creation code to work with latest tracker version/segmentation writer.Pulled in fixes from LEVer tracker, likely this will make patching much more important.Minor fixes and modifications to get figures for paper.Modified readConnectData to make it a bit faster, particularly on large filesSingle frame assignment tracker with same cost function as our trackerassignment_trac…assignment_trackerAdded extent checking for the trackerUpdated movie tracking and reading.Disabling patchup code pending some necessary fixesVarious fixes and improvements to matlab scriptsmoved buildFullTrackList to separate m file.Fix patchup labelling bug. Fixed cost fcn.Commit of MATLAB dependencies.Major patching fixes. Fixed shared detection debug info. Associated MATLAB display fixes.Reset figure properties between movie scroll calls. Cost function fixes.Stable cost function. Tracked BDNF and ssNPY videos with this trackerFixed tracker and write gconnect. All MATLAB functions now use tracking structureMATLAB scripted tracking and plotConnect improvementsAdded standard vs20008/matlab gitignore file.Added clapack binary dependencies.Initial commit of new organelle tracker