ensembleSegValidateAll

ctcOptimize/ensembleSegValidate.m

-% ensembleSegValidate
-gtPath='g:\gRaw\ctc2020';
-outfolder='f:/ctcEvalEnsemble'
-strDB='f:\leverjs\ctc2020\2d\Fluo-N2DL-HeLa_training_02.LEVER';
+function [res,res1] = ensembleSegValidate(strDB,gtPath,outfolder)
 
 if ~exist(outfolder,'dir')
     mkdir(outfolder);
 end
-if ~exist('conn','var')
-    [conn,CONSTANTS,segParams]=openDB(strDB);
+if exist('conn','var')
+    close(conn);
 end
-segParams.minimumRadius_um=[2.5,0.05,4]
+[conn,CONSTANTS,segParams]=openDB(strDB);
 
 [~,dsName,~]=fileparts(strDB);
 minRadius_um=Ensemble.getEnsembleRadius(segParams.minimumRadius_um);
 
 for i=1:length(minRadius_um)
     sp=segParams;  
-    sp.sensitivity(1)=0.6; %s(h);
     sp.minimumRadius_um=minRadius_um(i);
     buildWrangleFile(strDB,outfolder,[dsName '_r_' num2str(i)],sp);
 end
 
 % run it
 Batch.batchSegmentFolder(outfolder,true);
+Batch.batchSegment(strDB,[],true);
 % score it...
 res=[];
 flist=dir(fullfile(outfolder,'*.LEVER'));
@@ -31,6 +28,6 @@ for ff=1:length(flist)
     res=[res;rx];
 end
 
-
-
+% now evaluate the ensembled one
+res1=ctcEval1(strDB,gtPath,outfolder);
 4;

ctcOptimize/ensembleSegValidateAll.m

+
+
+gtPath='g:\gRaw\ctc2020';
+outfolder='g:\ctcEvalEnsemble'
+ROOT='f:\leverjs\ctc2020\';
+
+flist=dir(fullfile(ROOT,'**/*training*.LEVER'));
+
+targets={'Fluo-N2DH-GOWT','Fluo-N2DH-SIM+','Fluo-N2DL-HeLa','PhC-C2DL-PSC',...
+    'Fluo-N3DH-CHO_training_01'};
+
+load 'resEnsemble.mat'
+% res=[];
+% res1=[];
+% resEnsemble=[];
+
+for ff=1:length(flist)
+    
+    strDB=fullfile(flist(ff).folder,flist(ff).name);
+    match=cellfun(@(x) strfind(strDB,x),targets,'UniformOutput',false);
+    if all(isempty([match{:}]))
+        continue
+    end
+    targetName=strrep(flist(ff).name,'_training','');
+    targetName=strrep(targetName,'.LEVER','');
+    if find(cellfun(@(x) ~isempty(x),strfind(res.name,targetName)))
+        continue
+    end
+    if exist(outfolder,'dir')
+        rmdir(outfolder,'s');
+    end
+    [rx,re]=ensembleSegValidate(strDB,gtPath,outfolder);
+    [~,idx]=max(rx.DET);
+    res1=[res1;rx(idx,:)];
+    res=[res;rx];
+    resEnsemble=[resEnsemble;re];
+end
+writetable(res,'res.txt')
+writetable(resEnsemble,'resEnsemble.txt')
+
+save('resEnsemble.mat','res','res1','resEnsemble');
\ No newline at end of file