ctc ensembleSegValidate

ctcOptimize/buildWrangleFile.m

@@ -14,5 +14,6 @@ close(conn);
 ljs=fullfile(outfolder,'lever.json');
 fout=fopen(ljs,'w+');
 root=fileparts(strDB);
+root=strrep(root,'\','\\');
 fprintf(fout,['{"ROOT":"' root '"}']);
 fclose(fout);

ctcOptimize/ensembleSegValidate.m

+% ensembleSegValidate
+gtPath='g:\gRaw\ctc2020';
+outfolder='f:/ctcEvalEnsemble'
+strDB='f:\leverjs\ctc2020\2d\Fluo-N2DL-HeLa_training_02.LEVER';
+
+if ~exist(outfolder,'dir')
+    mkdir(outfolder);
+end
+if ~exist('conn','var')
+    [conn,CONSTANTS,segParams]=openDB(strDB);
+end 
+segParams.minimumRadius_um=[2.5,0.05,4]
+
+[~,dsName,~]=fileparts(strDB);
+minRadius_um=Ensemble.getEnsembleRadius(segParams.minimumRadius_um);
+
+for i=1:length(minRadius_um)
+    sp=segParams;
+    sp.sensitivity(1)=0.6; %s(h);
+    sp.minimumRadius_um=minRadius_um(i);
+    buildWrangleFile(strDB,outfolder,[dsName '_r_' num2str(i)],sp);
+end
+
+% run it
+Batch.batchSegmentFolder(outfolder,true);
+% score it...
+res=[];
+flist=dir(fullfile(outfolder,'*.LEVER'));
+for ff=1:length(flist)
+    rx=ctcEval1(fullfile(flist(ff).folder,flist(ff).name),gtPath,outfolder)
+    res=[res;rx];
+end
+
+
+
+4;