This is the git repository for the The Cell Signaling Structure Function paper currently in review. The code here is for the two synthetic datasets shown in Figures 3 and 6.
This is the git repository for the The Cell Signaling Structure Function paper currently in review. Available as a preprint on [arxiv](https://arxiv.org/abs/2401.02501). The code here is for the two synthetic datasets shown in Figures 3 and 6.
Access for the MCF10A and HSC datasets is by request as they are nearly 1.4 terabytes combined.
## Introduction
In this repository are the code for two synthetic datasets: phantomKymography and phantomSSF. The latter requires the Hydra Image Processor to run.
In this repository are the code for two synthetic datasets: phantomKymograph (Figure 6) and phantomSSF (Figure 3). The latter requires the Hydra Image Processor to run.
This document will walk through installing the required tools and running the code. The code for phantomSSF is only one file, so most of this document will cover the phantomKymograph code.
# INSTALLATION
...
...
@@ -19,7 +19,7 @@ This document will walk through installing the required tools and running the co
3. Clone the [leverjs](https://git-bioimage.coe.drexel.edu/opensource/leverjs) repository.
4. Clone the [ncd](https://git-bioimage.coe.drexel.edu/opensource/ncd) repository.
Optional, for phantomSSF only
Optional, for phantomSSF only (Figure 3)
1. Install the [Hydra Image Processor](https://hydraimageprocessor.com/quick-start/).
