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Commit 4d85e659 authored by Layton Aho's avatar Layton Aho
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Update readme.md

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......@@ -2,5 +2,49 @@ This is a repository for the manuscript and accompanying code currently under de
Once the manuscript is released, all code will be licensed open source (license TBD, likely GPL or BSD).
questions? contact andrew.r.cohen 'at' drexel.edu
Questions? contact andrew.r.cohen 'at' drexel.edu
# INSTALLATION
## Prerequisites
1. Clone the required repositories:
```
git clone https://git-bioimage.coe.drexel.edu/opensource/rsf.git
```
and
```
git clone https://git-bioimage.coe.drexel.edu/opensource/ncd.git
```
and
HIP (how to install, use git? or install via HIP website?)
```
git clone https://git-bioimage.coe.drexel.edu/opensource/hydra-image-processor.git
```
2.
NODE? Right now required bececause of lever and lever utils dependencies.
## MATLAB Configuration
MATLAB version number minimum requirement?
Create a sample startup.m file in the rsf\src\MATLAB folder?
https://www.mathworks.com/help/matlab/ref/startup.html
USER is the username of the user running the RSF code. The path should reflect where the git install was located, in this example case in the USER folder.
```
addpath(genpath,('C:\Users\USER\hydra-image-processor\src\MATLAB'));
addpath(genpath('C:\Users\USER\ncd\src\MATLAB'));
addpath(genpath('C:\Users\USER\rsf\SRC\MATLAB'));
```
## Pipeline
1. Import images, sameple import code
2. Run?
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