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Commit 766106e3 authored by Andrew Cohen's avatar Andrew Cohen
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BSD license

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/******************************************************************************
This program, "NCDM", the associated MATLAB scripts and all
provided data, are copyright (C) 2013 Andrew R. Cohen and Mark Winter. All
rights reserved.
This program uses bzip2 compressor as a static library.
See the file SRC\C\bz2static\LICENSE.txt for details on that software.
This software may be referenced as:
◾Clark, B., M. Winter, A.R. Cohen, and B. Link, Generation of Rab-based transgenic
lines for in vivo studies of endosome biology in zebrafish. Developmental Dynamics,
2011. 240(11): p. 2452-65.
Redistribution and use in source and binary forms, with or without
modification, are permitted provided that the following conditions
are met:
1. Redistributions of source code must retain the above copyright
notice, this list of conditions and the following disclaimer.
2. The origin of this software must not be misrepresented; you must
not claim that you wrote the original software. If you use this
software in a product, an acknowledgment in the product
documentation would be appreciated but is not required.
3. Altered source versions must be plainly marked as such, and must
not be misrepresented as being the original software.
4. The name of the author may not be used to endorse or promote
products derived from this software without specific prior written
permission.
THIS SOFTWARE IS PROVIDED BY THE AUTHOR ``AS IS'' AND ANY EXPRESS
OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED
WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE
ARE DISCLAIMED. IN NO EVENT SHALL THE AUTHOR BE LIABLE FOR ANY
DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL
DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE
GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS
INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY,
WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING
NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS
SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
Andrew R. Cohen acohen@coe.drexel.edu
RABTools version 1.0 (release) November 2014
******************************************************************************/
\ No newline at end of file
src/SegmentAndTrack.m
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% SegmentAndTrack.m - This is the main program function for the RAB tools % SegmentAndTrack.m - This is the main program function for the RAB tools
% application. % application.
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
% %
% Copyright 2011-2014 Andrew Cohen and Mark Winter
% %
% This file is part of RABtools. See % /******************************************************************************
% https://git-bioimage.coe.drexel.edu for more details %
% This program, "NCDM", the associated MATLAB scripts and all
% provided data, are copyright (C) 2011-2014 Andrew R. Cohen and Mark
% Winter. All rights reserved.
%
% This program uses bzip2 compressor as a static library.
% See the file SRC\C\bz2static\LICENSE.txt for details on that software.
%
% This software may be referenced as:
%
% ?Clark, B., M. Winter, A.R. Cohen, and B. Link, Generation of Rab-based transgenic
% lines for in vivo studies of endosome biology in zebrafish. Developmental Dynamics,
% 2011. 240(11): p. 2452-65.
%
% Redistribution and use in source and binary forms, with or without
% modification, are permitted provided that the following conditions
% are met:
%
% 1. Redistributions of source code must retain the above copyright
% notice, this list of conditions and the following disclaimer.
%
% 2. The origin of this software must not be misrepresented; you must
% not claim that you wrote the original software. If you use this
% software in a product, an acknowledgment in the product
% documentation would be appreciated but is not required.
% %
% RABtools is free software: you can redistribute it and/or modify % 3. Altered source versions must be plainly marked as such, and must
% it under the terms of the GNU General Public License as published by % not be misrepresented as being the original software.
% the Free Software Foundation, either version 3 of the License, or
% (at your option) any later version.
% %
% RABtools is distributed in the hope that it will be useful, % 4. The name of the author may not be used to endorse or promote
% but WITHOUT ANY WARRANTY; without even the implied warranty of % products derived from this software without specific prior written
% MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the % permission.
% GNU General Public License for more details.
% %
% You should have received a copy of the GNU General Public License % THIS SOFTWARE IS PROVIDED BY THE AUTHOR ``AS IS'' AND ANY EXPRESS
% along with RABTools in file "gnu gpl v3.txt". If not, see % OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED
% <http://www.gnu.org/licenses/>. % WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE
% ARE DISCLAIMED. IN NO EVENT SHALL THE AUTHOR BE LIABLE FOR ANY
% DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL
% DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE
% GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS
% INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY,
% WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING
% NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS
% SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
% %
% The file assignmentoptimal.m was written by Markus Buehren and % Andrew R. Cohen acohen@coe.drexel.edu
% implements the bipartite assignment. licensing information for that % RABTools version 1.0 (release) November 2014
% function is given in the file.
% %
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%% % ******************************************************************************/
function SegmentAndTrack(varargin) function SegmentAndTrack(varargin)
......
src/cp_getnicedialoglocation.m
+ 53
− 0
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%
%
% /******************************************************************************
%
% This program, "NCDM", the associated MATLAB scripts and all
% provided data, are copyright (C) 2013 Andrew R. Cohen and Mark Winter. All
% rights reserved.
%
% This program uses bzip2 compressor as a static library.
% See the file SRC\C\bz2static\LICENSE.txt for details on that software.
%
% This software may be referenced as:
%
% ?Clark, B., M. Winter, A.R. Cohen, and B. Link, Generation of Rab-based transgenic
% lines for in vivo studies of endosome biology in zebrafish. Developmental Dynamics,
% 2011. 240(11): p. 2452-65.
%
% Redistribution and use in source and binary forms, with or without
% modification, are permitted provided that the following conditions
% are met:
%
% 1. Redistributions of source code must retain the above copyright
% notice, this list of conditions and the following disclaimer.
%
% 2. The origin of this software must not be misrepresented; you must
% not claim that you wrote the original software. If you use this
% software in a product, an acknowledgment in the product
% documentation would be appreciated but is not required.
%
% 3. Altered source versions must be plainly marked as such, and must
% not be misrepresented as being the original software.
%
% 4. The name of the author may not be used to endorse or promote
% products derived from this software without specific prior written
% permission.
%
% THIS SOFTWARE IS PROVIDED BY THE AUTHOR ``AS IS'' AND ANY EXPRESS
% OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED
% WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE
% ARE DISCLAIMED. IN NO EVENT SHALL THE AUTHOR BE LIABLE FOR ANY
% DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL
% DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE
% GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS
% INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY,
% WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING
% NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS
% SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
%
% Andrew R. Cohen acohen@coe.drexel.edu
% RABTools version 1.0 (release) November 2014
%
% ******************************************************************************/
function figure_size = cp_getnicedialoglocation(figure_size, figure_units) function figure_size = cp_getnicedialoglocation(figure_size, figure_units)
% adjust the specified figure position to fig nicely over GCBF % adjust the specified figure position to fig nicely over GCBF
% or into the upper 3rd of the screen % or into the upper 3rd of the screen
......
src/cp_setdefaultbutton.m
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%
%
% /******************************************************************************
%
% This program, "NCDM", the associated MATLAB scripts and all
% provided data, are copyright (C) 2013 Andrew R. Cohen and Mark Winter. All
% rights reserved.
%
% This program uses bzip2 compressor as a static library.
% See the file SRC\C\bz2static\LICENSE.txt for details on that software.
%
% This software may be referenced as:
%
% ?Clark, B., M. Winter, A.R. Cohen, and B. Link, Generation of Rab-based transgenic
% lines for in vivo studies of endosome biology in zebrafish. Developmental Dynamics,
% 2011. 240(11): p. 2452-65.
%
% Redistribution and use in source and binary forms, with or without
% modification, are permitted provided that the following conditions
% are met:
%
% 1. Redistributions of source code must retain the above copyright
% notice, this list of conditions and the following disclaimer.
%
% 2. The origin of this software must not be misrepresented; you must
% not claim that you wrote the original software. If you use this
% software in a product, an acknowledgment in the product
% documentation would be appreciated but is not required.
%
% 3. Altered source versions must be plainly marked as such, and must
% not be misrepresented as being the original software.
%
% 4. The name of the author may not be used to endorse or promote
% products derived from this software without specific prior written
% permission.
%
% THIS SOFTWARE IS PROVIDED BY THE AUTHOR ``AS IS'' AND ANY EXPRESS
% OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED
% WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE
% ARE DISCLAIMED. IN NO EVENT SHALL THE AUTHOR BE LIABLE FOR ANY
% DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL
% DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE
% GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS
% INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY,
% WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING
% NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS
% SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
%
% Andrew R. Cohen acohen@coe.drexel.edu
% RABTools version 1.0 (release) November 2014
%
% ******************************************************************************/
function cp_setdefaultbutton(figHandle, btnHandle) function cp_setdefaultbutton(figHandle, btnHandle)
% WARNING: This feature is not supported in MATLAB and the API and % WARNING: This feature is not supported in MATLAB and the API and
% functionality may change in a future release. % functionality may change in a future release.
......
src/gnu gpl v3.txt deleted 100644 → 0
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src/nmquestdlg.m
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%
%
% /******************************************************************************
%
% This program, "NCDM", the associated MATLAB scripts and all
% provided data, are copyright (C) 2013 Andrew R. Cohen and Mark Winter. All
% rights reserved.
%
% This program uses bzip2 compressor as a static library.
% See the file SRC\C\bz2static\LICENSE.txt for details on that software.
%
% This software may be referenced as:
%
% ?Clark, B., M. Winter, A.R. Cohen, and B. Link, Generation of Rab-based transgenic
% lines for in vivo studies of endosome biology in zebrafish. Developmental Dynamics,
% 2011. 240(11): p. 2452-65.
%
% Redistribution and use in source and binary forms, with or without
% modification, are permitted provided that the following conditions
% are met:
%
% 1. Redistributions of source code must retain the above copyright
% notice, this list of conditions and the following disclaimer.
%
% 2. The origin of this software must not be misrepresented; you must
% not claim that you wrote the original software. If you use this
% software in a product, an acknowledgment in the product
% documentation would be appreciated but is not required.
%
% 3. Altered source versions must be plainly marked as such, and must
% not be misrepresented as being the original software.
%
% 4. The name of the author may not be used to endorse or promote
% products derived from this software without specific prior written
% permission.
%
% THIS SOFTWARE IS PROVIDED BY THE AUTHOR ``AS IS'' AND ANY EXPRESS
% OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED
% WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE
% ARE DISCLAIMED. IN NO EVENT SHALL THE AUTHOR BE LIABLE FOR ANY
% DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL
% DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE
% GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS
% INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY,
% WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING
% NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS
% SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
%
% Andrew R. Cohen acohen@coe.drexel.edu
% RABTools version 1.0 (release) November 2014
%
% ******************************************************************************/
function ButtonName=nmquestdlg(Question,Title,Btn1,Btn2,Btn3,Default) function ButtonName=nmquestdlg(Question,Title,Btn1,Btn2,Btn3,Default)
%QUESTDLG Question dialog box. %QUESTDLG Question dialog box.
% ButtonName = QUESTDLG(Question) creates a modal dialog box that % ButtonName = QUESTDLG(Question) creates a modal dialog box that
......
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