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Commit 14e63f51 authored by Andrew Cohen's avatar Andrew Cohen
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Merge remote-tracking branch 'origin/pubmed' into wikipedia_AND 

Conflicts:
	results.txt
parents bef2f507 56265600
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GetCount.m.BACKUP.7112.m 0 → 100644
+ 145
− 0
View file @ 14e63f51
function f = GetCount(words)
global nQueryCount nCacheCount strServer
if isempty(strServer)
strServer='wikipedia'
end
term=[words{1}];
for i=2:length(words)
term=[ term '+' words{i}];
end
idx=strfind(term,' ');
term(idx)='+';
%check cache
global QueryCache
cc=strcmp(QueryCache.Queries,term);
if ~isempty(cc) && any(cc)
idx=find(cc);
f=QueryCache.Count(idx);
nCacheCount=nCacheCount+1;
return
end
<<<<<<< HEAD
if strcmp(strServer,'pubmed')
f=doURLQueryPubmed(term);
elseif strcmp(strServer,'amazon')
f=doURLQueryAmazon(term);
else
f=doURLQueryWikipedia(term);
end
nQueryCount=nQueryCount+1;
QueryCache.Queries=[QueryCache.Queries {term}];
QueryCache.Count=[QueryCache.Count f];
end
function f=doURLQueryWikipedia(term)
URL=['http://en.wikipedia.org/w/index.php?title=Special%3ASearch&profile=default&search=' term '+&fulltext=Search'];
str = urlread(URL);
try
idx=strfind(str,'div class="results-info"');
idx=idx(1);
str2=str(idx:end);
idx2=strfind(str2,'of <b>');
str3=str2(idx2+6:end);
idx3=strfind(str3,'</b>');
idx3=idx3(1);
nx=str3(1:idx3-1);
f=str2double(nx);
catch
f=0;
end
end
function f=doURLQueryPubmed(term)
URL = [ 'http://www.ncbi.nlm.nih.gov/gquery/?term=' term];
str = urlread(URL);
try
key = '<h2>About ';
idx1=strfind(str,key);
idx1=idx1+length(key);
idx2=strfind(str(idx1:end), 'search results for');
nx=str(idx1:idx1+idx2-2);
=======
% http://en.wikipedia.org/w/index.php?title=Special%3ASearch&profile=default&search=blue+OR+elephant+&fulltext=Search
% URL=['http://en.wikipedia.org/w/index.php?title=Special%3ASearch&profile=default&search=' term '+&fulltext=Search'];
% http://www.ncbi.nlm.nih.gov/gquery/?term=WHSC1%2CNSD1%2CASH1L%2CSETD2%2C
URL=['http://www.amazon.com/s/ref=nb_sb_noss?url=search-alias%3Daps&field-keywords=' term '&rh=i%3Aaps%2Ck%3A' term];
% URL = [ 'http://www.ncbi.nlm.nih.gov/gquery/?term=' term];
% URL = [ 'http://www.ncbi.nlm.nih.gov/protein/?term=' term];
for i=1:5
str = urlread(URL);
try
%amazon
idx=strfind(str,'results for <span class="');
idx=idx(1)-2;
idxStart=idx;
while(str(idxStart)~=' ')
idxStart=idxStart-1;
end
nx=str(idxStart:idx);
% WIKIPEDIA%
% idx=strfind(str,'div class="results-info"');
% idx=idx(1);
% str2=str(idx:end);
%
% idx2=strfind(str2,'of <b>');
% str3=str2(idx2+6:end);
%
% idx3=strfind(str3,'</b>');
% idx3=idx3(1);
%
% nx=str3(1:idx3-1);
% END WIKIPEDIA
>>>>>>> bef2f507c6358a5ceee1c070702fd6d9ada135b7
f=str2double(nx);
break;
catch
f=0;
pause(1);
end
end
end
function f=doURLQueryAmazon(term)
URL=['http://www.amazon.com/s/ref=nb_sb_noss?url=search-alias%3Daps&field-keywords=' term '&rh=i%3Aaps%2Ck%3A' term];
for i=1:5
str = urlread(URL);
try
%amazon
idx=strfind(str,'results for <span class="');
idx=idx(1)-2;
idxStart=idx;
while(str(idxStart)~=' ')
idxStart=idxStart-1;
end
nx=str(idxStart:idx);
f=str2double(nx);
break;
catch
f=0;
pause(1);
end
end
end
GetCount.m.BASE.7112.m 0 → 100644
+ 52
− 0
View file @ 14e63f51
function f = GetCount(words)
global nQueryCount nCacheCount
term=[words{1}];
for i=2:length(words)
term=[ term '+' words{i}];
end
idx=strfind(term,' ');
term(idx)='+';
%check cache
global QueryCache
cc=strcmp(QueryCache.Queries,term);
if ~isempty(cc) && any(cc)
idx=find(cc);
f=QueryCache.Count(idx);
nCacheCount=nCacheCount+1;
return
end
% http://en.wikipedia.org/w/index.php?title=Special%3ASearch&profile=default&search=blue+OR+elephant+&fulltext=Search
% URL=['http://en.wikipedia.org/w/index.php?title=Special%3ASearch&profile=default&search=' term '+&fulltext=Search'];
% http://www.ncbi.nlm.nih.gov/gquery/?term=WHSC1%2CNSD1%2CASH1L%2CSETD2%2C
URL = [ 'http://www.ncbi.nlm.nih.gov/gquery/?term=' term];
str = urlread(URL);
try
key = '<h2>About ';
idx1=strfind(str,key);
idx1=idx1+length(key);
idx2=strfind(str(idx1:end), 'search results for');
nx=str(idx1:idx1+idx2-2);
% idx=strfind(str,'div class="results-info"');
% WIKIPEDIA
% idx=idx(1);
% str2=str(idx:end);
%
% idx2=strfind(str2,'of <b>');
% str3=str2(idx2+6:end);
%
% idx3=strfind(str3,'</b>');
% idx3=idx3(1);
%
% nx=str3(1:idx3-1);
% END WIKIPEDIA
f=str2double(nx);
catch
f=0;
end
nQueryCount=nQueryCount+1;
QueryCache.Queries=[QueryCache.Queries {term}];
QueryCache.Count=[QueryCache.Count f];
GetCount.m.LOCAL.7112.m 0 → 100644
+ 106
− 0
View file @ 14e63f51
function f = GetCount(words)
global nQueryCount nCacheCount strServer
if isempty(strServer)
strServer='wikipedia'
end
term=[words{1}];
for i=2:length(words)
term=[ term '+' words{i}];
end
idx=strfind(term,' ');
term(idx)='+';
%check cache
global QueryCache
cc=strcmp(QueryCache.Queries,term);
if ~isempty(cc) && any(cc)
idx=find(cc);
f=QueryCache.Count(idx);
nCacheCount=nCacheCount+1;
return
end
if strcmp(strServer,'pubmed')
f=doURLQueryPubmed(term);
elseif strcmp(strServer,'amazon')
f=doURLQueryAmazon(term);
else
f=doURLQueryWikipedia(term);
end
nQueryCount=nQueryCount+1;
QueryCache.Queries=[QueryCache.Queries {term}];
QueryCache.Count=[QueryCache.Count f];
end
function f=doURLQueryWikipedia(term)
URL=['http://en.wikipedia.org/w/index.php?title=Special%3ASearch&profile=default&search=' term '+&fulltext=Search'];
str = urlread(URL);
try
idx=strfind(str,'div class="results-info"');
idx=idx(1);
str2=str(idx:end);
idx2=strfind(str2,'of <b>');
str3=str2(idx2+6:end);
idx3=strfind(str3,'</b>');
idx3=idx3(1);
nx=str3(1:idx3-1);
f=str2double(nx);
catch
f=0;
end
end
function f=doURLQueryPubmed(term)
URL = [ 'http://www.ncbi.nlm.nih.gov/gquery/?term=' term];
str = urlread(URL);
try
key = '<h2>About ';
idx1=strfind(str,key);
idx1=idx1+length(key);
idx2=strfind(str(idx1:end), 'search results for');
nx=str(idx1:idx1+idx2-2);
f=str2double(nx);
catch
f=0;
end
end
function f=doURLQueryAmazon(term)
URL=['http://www.amazon.com/s/ref=nb_sb_noss?url=search-alias%3Daps&field-keywords=' term '&rh=i%3Aaps%2Ck%3A' term];
for i=1:5
str = urlread(URL);
try
%amazon
idx=strfind(str,'results for <span class="');
idx=idx(1)-2;
idxStart=idx;
while(str(idxStart)~=' ')
idxStart=idxStart-1;
end
nx=str(idxStart:idx);
f=str2double(nx);
break;
catch
f=0;
pause(1);
end
end
end
GetCount.m.REMOTE.7112.m 0 → 100644
+ 64
− 0
View file @ 14e63f51
function f = GetCount(words)
global nQueryCount nCacheCount
term=[words{1}];
for i=2:length(words)
term=[ term '+' words{i}];
end
idx=strfind(term,' ');
term(idx)='+';
%check cache
global QueryCache
cc=strcmp(QueryCache.Queries,term);
if ~isempty(cc) && any(cc)
idx=find(cc);
f=QueryCache.Count(idx);
nCacheCount=nCacheCount+1;
return
end
% http://en.wikipedia.org/w/index.php?title=Special%3ASearch&profile=default&search=blue+OR+elephant+&fulltext=Search
% URL=['http://en.wikipedia.org/w/index.php?title=Special%3ASearch&profile=default&search=' term '+&fulltext=Search'];
% http://www.ncbi.nlm.nih.gov/gquery/?term=WHSC1%2CNSD1%2CASH1L%2CSETD2%2C
URL=['http://www.amazon.com/s/ref=nb_sb_noss?url=search-alias%3Daps&field-keywords=' term '&rh=i%3Aaps%2Ck%3A' term];
% URL = [ 'http://www.ncbi.nlm.nih.gov/gquery/?term=' term];
% URL = [ 'http://www.ncbi.nlm.nih.gov/protein/?term=' term];
for i=1:5
str = urlread(URL);
try
%amazon
idx=strfind(str,'results for <span class="');
idx=idx(1)-2;
idxStart=idx;
while(str(idxStart)~=' ')
idxStart=idxStart-1;
end
nx=str(idxStart:idx);
% WIKIPEDIA%
% idx=strfind(str,'div class="results-info"');
% idx=idx(1);
% str2=str(idx:end);
%
% idx2=strfind(str2,'of <b>');
% str3=str2(idx2+6:end);
%
% idx3=strfind(str3,'</b>');
% idx3=idx3(1);
%
% nx=str3(1:idx3-1);
% END WIKIPEDIA
f=str2double(nx);
break;
catch
f=0;
pause(1);
end
end
nQueryCount=nQueryCount+1;
QueryCache.Queries=[QueryCache.Queries {term}];
QueryCache.Count=[QueryCache.Count f];
GetCount.m.orig 0 → 100644
+ 145
− 0
View file @ 14e63f51
function f = GetCount(words)
global nQueryCount nCacheCount strServer
if isempty(strServer)
strServer='wikipedia'
end
term=[words{1}];
for i=2:length(words)
term=[ term '+' words{i}];
end
idx=strfind(term,' ');
term(idx)='+';
%check cache
global QueryCache
cc=strcmp(QueryCache.Queries,term);
if ~isempty(cc) && any(cc)
idx=find(cc);
f=QueryCache.Count(idx);
nCacheCount=nCacheCount+1;
return
end
<<<<<<< HEAD
if strcmp(strServer,'pubmed')
f=doURLQueryPubmed(term);
elseif strcmp(strServer,'amazon')
f=doURLQueryAmazon(term);
else
f=doURLQueryWikipedia(term);
end
nQueryCount=nQueryCount+1;
QueryCache.Queries=[QueryCache.Queries {term}];
QueryCache.Count=[QueryCache.Count f];
end
function f=doURLQueryWikipedia(term)
URL=['http://en.wikipedia.org/w/index.php?title=Special%3ASearch&profile=default&search=' term '+&fulltext=Search'];
str = urlread(URL);
try
idx=strfind(str,'div class="results-info"');
idx=idx(1);
str2=str(idx:end);
idx2=strfind(str2,'of <b>');
str3=str2(idx2+6:end);
idx3=strfind(str3,'</b>');
idx3=idx3(1);
nx=str3(1:idx3-1);
f=str2double(nx);
catch
f=0;
end
end
function f=doURLQueryPubmed(term)
URL = [ 'http://www.ncbi.nlm.nih.gov/gquery/?term=' term];
str = urlread(URL);
try
key = '<h2>About ';
idx1=strfind(str,key);
idx1=idx1+length(key);
idx2=strfind(str(idx1:end), 'search results for');
nx=str(idx1:idx1+idx2-2);
=======
% http://en.wikipedia.org/w/index.php?title=Special%3ASearch&profile=default&search=blue+OR+elephant+&fulltext=Search
% URL=['http://en.wikipedia.org/w/index.php?title=Special%3ASearch&profile=default&search=' term '+&fulltext=Search'];
% http://www.ncbi.nlm.nih.gov/gquery/?term=WHSC1%2CNSD1%2CASH1L%2CSETD2%2C
URL=['http://www.amazon.com/s/ref=nb_sb_noss?url=search-alias%3Daps&field-keywords=' term '&rh=i%3Aaps%2Ck%3A' term];
% URL = [ 'http://www.ncbi.nlm.nih.gov/gquery/?term=' term];
% URL = [ 'http://www.ncbi.nlm.nih.gov/protein/?term=' term];
for i=1:5
str = urlread(URL);
try
%amazon
idx=strfind(str,'results for <span class="');
idx=idx(1)-2;
idxStart=idx;
while(str(idxStart)~=' ')
idxStart=idxStart-1;
end
nx=str(idxStart:idx);
% WIKIPEDIA%
% idx=strfind(str,'div class="results-info"');
% idx=idx(1);
% str2=str(idx:end);
%
% idx2=strfind(str2,'of <b>');
% str3=str2(idx2+6:end);
%
% idx3=strfind(str3,'</b>');
% idx3=idx3(1);
%
% nx=str3(1:idx3-1);
% END WIKIPEDIA
>>>>>>> bef2f507c6358a5ceee1c070702fd6d9ada135b7
f=str2double(nx);
break;
catch
f=0;
pause(1);
end
end
end
function f=doURLQueryAmazon(term)
URL=['http://www.amazon.com/s/ref=nb_sb_noss?url=search-alias%3Daps&field-keywords=' term '&rh=i%3Aaps%2Ck%3A' term];
for i=1:5
str = urlread(URL);
try
%amazon
idx=strfind(str,'results for <span class="');
idx=idx(1)-2;
idxStart=idx;
while(str(idxStart)~=' ')
idxStart=idxStart-1;
end
nx=str(idxStart:idx);
f=str2double(nx);
break;
catch
f=0;
pause(1);
end
end
end
goPubMed.m
+ 58
− 16
View file @ 14e63f51
% http://www.nature.com/nrd/journal/v11/n5/fig_tab/nrd3674_F2.html
% words1={'ELP3','KAT2B','MYST4','KAT5','HAT1'}; % PMTs %http://www.nature.com/nature/journal/v511/n7510/full/nature13595.html
% words2={'CREBBP','EP300','MLL','PHIP','BRWD3'}; %BRDs % supp table 2, in ranked order
shizophrenia = {'rs1702294','rs11191419','rs2007044','rs4129585',...
'rs35518360'};
% http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3250464/
% table 1
leukemia = {'rs17483466','rs13397985','rs757978','rs2456449','rs735665',...
'rs783540','rs305061','rs391525','rs1036935','rs11083846'};
%alzheimers
% http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3365264/
% table 1
% http://www.nature.com/tp/journal/v2/n5/fig_tab/tp201245t1.html#figure-title
alzheimers={'rs4420638','rs7561528','rs17817600','rs3748140','rs12808148','rs6856768','rs11738335','rs1357692'};
% obesity
% http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2858696/
% table 1
obesity={'rs10926984','rs12145833','rs2783963','rs11127485','rs17150703','rs13278851'};
% %
% words1={'SwObihiro92','Leningrad91','Stockholm90','Yamagata89'}; % II % % neuroblastoma
% words2={'SwNebraska92','SwStHyacinthe91','SwQuebec90','SwIowa88'}; % % http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3716226/
% % table 3
% neuroblastoma={'rs6939340','rs4712653','rs6435862','rs3768716','rs7585356'};
% neuroblastoma 2
% http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2742373/table/T1/
neuroblastoma = {'rs6939340','rs4712653','rs9295536','rs3790171','rs7272481'};
% parkinsons
% http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3305333/
% table 2, rs entries, by pvalue
% now trying http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3852568/table/tbl03/
% p<.1% in 2/3
% parkinsons={'rs356219','rs10847864','rs1491942','rs947211','rs2390669'}
parkinsons={'rs356219','rs10847864','rs2942168','rs11724635'}
% words1={'Cap-G','aub','vas','neb'}; % mitotic chromosome condensation words={ alzheimers;parkinsons;shizophrenia;leukemia;obesity;neuroblastoma}
% words2={'br','velo','E2f','Dp','ctp'}; % cell death
% words1={'cytoskeleton' 'Actin','Arp2/3','Coronin','Dystrophin','FtsZ','Keratin'} % Cytoskeletal proteins global QueryCache
% words2={'adhesion' 'Cadherin','Ependymin','Integrin','NCAM','Selectin'} % Cell adhesion if isempty(QueryCache)
QueryCache.Queries={};
QueryCache.Count=[];
end
global nQueryCount nCacheCount
nQueryCount=0;
nCacheCount=0;
% words1={ 'DRD2', 'GRM3', 'GRIN2A', 'SRR', 'CACNA1I', 'RIMS1', 'KCTD13'} d=[];
% words2={ 'LRRK2', 'PINK1', 'ATP13A2', 'MAPT', 'SNCA', 'HLA-DRB5', 'BST1','GAK'... for i=1:length(words)
% 'ACMSD', 'STK39', 'MCCC1/LAMP3', 'SYT11', 'CCDC62/HIP1R'} for j=1:length(words)
d(i,j)=NWD( [words{i},words{j}]);
end
end
words1={'rs17483466','rs13397985','rs757978','rs872071','rs2456449','rs735665'} dx=[];
words2={'rs4420638','rs7561528','rs17817600','rs3748140','rs12808148','rs6856768','rs11738335','rs1357692' } for i=1:length(words)
[d1, d2]=GetDistances(words1,words2); for j=1:length(words)
idx=getDistancesPairs(words1,words2); dx(i,j)=d(i,j)-d(i,i);
end
end
xlswrite('rr.xls',[d dx])
pubmed gwas results.pdf 0 → 100644
+ 0
− 0
View file @ 14e63f51
File added
pubmed gwas results.xlsx 0 → 100644
+ 0
− 0
View file @ 14e63f51
File added
results.txt.orig 0 → 100644
+ 546
− 0
View file @ 14e63f51
-------------------------
GetDistances::(multiples) NW=5
2014 5 1 16 51 5.961
red,orange,yellow,green,blue,indigo,lion,tiger,bear,monkey,zebra,elephant,nQueryCount=49, nCacheCount=335
[6 0;0 6]
-------------------------
GetDistances::(pairs)
2014 5 1 16 51 57.306
red,orange,yellow,green,blue,indigo,lion,tiger,bear,monkey,zebra,elephant,kGap=2
nQueryCount=66, nCacheCount=198
nCorrect=11
-------------------------
GetDistances::(multiples) NW=5
2014 5 1 16 52 14.308
red,orange,yellow,green,blue,indigo,square,circle,rectangle,ellipse,triangle,rhombus,nQueryCount=30, nCacheCount=354
[6 0;0 6]
-------------------------
GetDistances::(pairs)
2014 5 1 16 52 53.707
red,orange,yellow,green,blue,indigo,square,circle,rectangle,ellipse,triangle,rhombus,kGap=2
nQueryCount=51, nCacheCount=213
nCorrect=12
-------------------------
GetDistances::(multiples) NW=5
2014 5 1 16 53 30.481
Barack Obama,Hillary Clinton,John Edwards,Joe Biden,Chris Dodd,Mike Gravel,John McCain,Mitt Romney,Mike Huckabee,Ron Paul,Fred Thompson,Alan Keyes,nQueryCount=48, nCacheCount=336
[6 0;0 6]
-------------------------
GetDistances::(pairs)
2014 5 1 16 54 30.869
Barack Obama,Hillary Clinton,John Edwards,Joe Biden,Chris Dodd,Mike Gravel,John McCain,Mitt Romney,Mike Huckabee,Ron Paul,Fred Thompson,Alan Keyes,kGap=2
nQueryCount=66, nCacheCount=198
nCorrect=7
-------------------------
GetDistances::(multiples) NW=5
2014 5 1 16 54 55.778
Labidochromis caeruleus,Sciaenochromis fryeri,Betta splendens,Carassius auratus,Melanochromis cyaneorhabdos,Ecsenius bicolor,Pictichromis paccagnellae,Amphiprion ocellaris ,Paracanthurus hepatus,Chromis viridis,nQueryCount=40, nCacheCount=240
[0 5;0 5]
-------------------------
GetDistances::(multiples) NW=5
2014 5 26 17 48 59.115
red,orange,yellow,green,blue,indigo,lion,tiger,bear,monkey,zebra,elephant,nQueryCount=49, nCacheCount=335
[6 0;0 6]
-------------------------
GetDistances::(pairs)
2014 5 26 17 49 47.104
red,orange,yellow,green,blue,indigo,lion,tiger,bear,monkey,zebra,elephant,kGap=2
nQueryCount=66, nCacheCount=198
nCorrect=11
-------------------------
GetDistances::(multiples) NW=5
2014 5 26 17 50 3.128
red,orange,yellow,green,blue,indigo,square,circle,rectangle,ellipse,triangle,rhombus,nQueryCount=30, nCacheCount=354
[6 0;0 6]
-------------------------
GetDistances::(pairs)
2014 5 26 17 50 38.946
red,orange,yellow,green,blue,indigo,square,circle,rectangle,ellipse,triangle,rhombus,kGap=2
nQueryCount=51, nCacheCount=213
nCorrect=12
-------------------------
GetDistances::(multiples) NW=5
2014 5 26 17 51 15.729
Barack Obama,Hillary Clinton,John Edwards,Joe Biden,Chris Dodd,Mike Gravel,John McCain,Mitt Romney,Mike Huckabee,Ron Paul,Fred Thompson,Alan Keyes,nQueryCount=48, nCacheCount=336
[6 0;0 6]
-------------------------
GetDistances::(pairs)
2014 5 26 17 52 16.695
Barack Obama,Hillary Clinton,John Edwards,Joe Biden,Chris Dodd,Mike Gravel,John McCain,Mitt Romney,Mike Huckabee,Ron Paul,Fred Thompson,Alan Keyes,kGap=2
nQueryCount=66, nCacheCount=198
nCorrect=7
-------------------------
GetDistances::(multiples) NW=5
2014 5 26 17 52 38.784
Labidochromis caeruleus,Sciaenochromis fryeri,Betta splendens,Carassius auratus,Melanochromis cyaneorhabdos,Ecsenius bicolor,Pictichromis paccagnellae,Amphiprion ocellaris ,Paracanthurus hepatus,Chromis viridis,nQueryCount=40, nCacheCount=240
[0 5;0 5]
-------------------------
GetDistances::(multiples) NW=5
2014 5 26 18 9 46.311
red,orange,yellow,green,blue,indigo,lion,tiger,bear,monkey,zebra,elephant,nQueryCount=150, nCacheCount=474
[0 6;6 0]
-------------------------
GetDistances::(pairs)
2014 5 26 18 9 48.012
red,orange,yellow,green,blue,indigo,lion,tiger,bear,monkey,zebra,elephant,kGap=4
nQueryCount=0, nCacheCount=330
nCorrect=7
-------------------------
GetDistances::(multiples) NW=5
2014 5 26 18 10 50.192
red,orange,yellow,green,blue,indigo,square,circle,rectangle,ellipse,triangle,rhombus,nQueryCount=111, nCacheCount=513
[0 6;4 2]
-------------------------
GetDistances::(pairs)
2014 5 26 18 10 51.87
red,orange,yellow,green,blue,indigo,square,circle,rectangle,ellipse,triangle,rhombus,kGap=3
nQueryCount=0, nCacheCount=330
nCorrect=6
-------------------------
GetDistances::(multiples) NW=5
2014 5 26 18 12 44.564
Barack Obama,Hillary Clinton,John Edwards,Joe Biden,Chris Dodd,Mike Gravel,John McCain,Mitt Romney,Mike Huckabee,Ron Paul,Fred Thompson,Alan Keyes,nQueryCount=150, nCacheCount=474
[1 5;6 0]
-------------------------
GetDistances::(pairs)
2014 5 26 18 12 46.22
Barack Obama,Hillary Clinton,John Edwards,Joe Biden,Chris Dodd,Mike Gravel,John McCain,Mitt Romney,Mike Huckabee,Ron Paul,Fred Thompson,Alan Keyes,kGap=2
nQueryCount=0, nCacheCount=330
nCorrect=8
-------------------------
GetDistances::(multiples) NW=5
2014 5 26 18 13 46.902
Labidochromis caeruleus,Sciaenochromis fryeri,Betta splendens,Carassius auratus,Melanochromis cyaneorhabdos,Ecsenius bicolor,Pictichromis paccagnellae,Amphiprion ocellaris ,Paracanthurus hepatus,Chromis viridis,nQueryCount=100, nCacheCount=340
[0 5;0 5]
-------------------------
GetDistances::(pairs)
2014 5 26 18 13 48.428
Labidochromis caeruleus,Sciaenochromis fryeri,Betta splendens,Carassius auratus,Melanochromis cyaneorhabdos,Ecsenius bicolor,Pictichromis paccagnellae,Amphiprion ocellaris ,Paracanthurus hepatus,Chromis viridis,kGap=3
nQueryCount=0, nCacheCount=225
nCorrect=7
-------------------------
GetDistances::(multiples) NW=5
2014 5 27 11 29 56.627
red,orange,yellow,green,blue,indigo,lion,tiger,bear,monkey,zebra,elephant,nQueryCount=0, nCacheCount=672
[6 0;3 3]
-------------------------
GetDistances::(pairs)
2014 5 27 11 29 58.3
red,orange,yellow,green,blue,indigo,lion,tiger,bear,monkey,zebra,elephant,kGap=1
nQueryCount=0, nCacheCount=396
nCorrect=10
-------------------------
GetDistances::(multiples) NW=5
2014 5 27 11 29 58.339
red,orange,yellow,green,blue,indigo,square,circle,rectangle,ellipse,triangle,rhombus,nQueryCount=0, nCacheCount=672
[6 0;2 4]
-------------------------
GetDistances::(pairs)
2014 5 27 11 30 0.027
red,orange,yellow,green,blue,indigo,square,circle,rectangle,ellipse,triangle,rhombus,kGap=2
nQueryCount=0, nCacheCount=396
nCorrect=9
-------------------------
GetDistances::(multiples) NW=5
2014 5 27 11 30 0.066
Barack Obama,Hillary Clinton,John Edwards,Joe Biden,Chris Dodd,Mike Gravel,John McCain,Mitt Romney,Mike Huckabee,Ron Paul,Fred Thompson,Alan Keyes,nQueryCount=0, nCacheCount=672
[6 0;0 6]
-------------------------
GetDistances::(pairs)
2014 5 27 11 30 1.765
Barack Obama,Hillary Clinton,John Edwards,Joe Biden,Chris Dodd,Mike Gravel,John McCain,Mitt Romney,Mike Huckabee,Ron Paul,Fred Thompson,Alan Keyes,kGap=2
nQueryCount=0, nCacheCount=396
nCorrect=7
-------------------------
GetDistances::(multiples) NW=5
2014 5 27 11 30 1.794
Labidochromis caeruleus,Sciaenochromis fryeri,Betta splendens,Carassius auratus,Melanochromis cyaneorhabdos,Ecsenius bicolor,Pictichromis paccagnellae,Amphiprion ocellaris ,Paracanthurus hepatus,Chromis viridis,nQueryCount=0, nCacheCount=480
[0 5;0 5]
-------------------------
GetDistances::(multiples) NW=5
2014 7 2 12 52 27.35
WHSC1,NSD1,ASH1l,SETD2,MLL5,CREBBP,EP300,MLL,PHIP(2),BRWD3(2),nQueryCount=141, nCacheCount=339
[0 5;0 5]
-------------------------
GetDistances::(multiples) NW=5
2014 7 2 13 3 7.572
WHSC1,NSD1,ASH1l,SETD2,MLL5,CREBBP,EP300,MLL,PHIP(2),BRWD3(2),nQueryCount=130, nCacheCount=350
[2 3;0 5]
-------------------------
GetDistances::(pairs)
2014 7 2 13 3 23.862
WHSC1,NSD1,ASH1l,SETD2,MLL5,CREBBP,EP300,MLL,PHIP(2),BRWD3(2),kGap=1
nQueryCount=45, nCacheCount=225
nCorrect=9
-------------------------
GetDistances::(multiples) NW=5
2014 7 2 13 9 10.186
ELP3,KAT2B,MYST4,KAT5,HAT1,CREBBP,EP300,MLL,PHIP(2),BRWD3(2),nQueryCount=100, nCacheCount=380
[4 1;2 3]
-------------------------
GetDistances::(pairs)
2014 7 2 13 9 24.264
ELP3,KAT2B,MYST4,KAT5,HAT1,CREBBP,EP300,MLL,PHIP(2),BRWD3(2),kGap=1
nQueryCount=35, nCacheCount=235
nCorrect=7
-------------------------
GetDistances::(multiples) NW=5
2014 7 2 15 0 45.002
ELP3,KAT2B,MYST4,KAT5,HAT1,CREBBP,EP300,MLL,PHIP,BRWD3,nQueryCount=141, nCacheCount=339
[3 2;2 3]
-------------------------
GetDistances::(pairs)
2014 7 2 15 1 0.536
ELP3,KAT2B,MYST4,KAT5,HAT1,CREBBP,EP300,MLL,PHIP,BRWD3,kGap=1
nQueryCount=45, nCacheCount=225
nCorrect=7
-------------------------
GetDistances::(multiples) NW=5
2014 7 2 15 4 42.089
PPRV,CDV,RPV,MeV,hPIV2,SV41,PIV5,MuV,PorPV,MprPV,nQueryCount=141, nCacheCount=339
[2 2;4 2]
-------------------------
GetDistances::(pairs)
2014 7 2 15 4 53.022
PPRV,CDV,RPV,MeV,hPIV2,SV41,PIV5,MuV,PorPV,MprPV,kGap=1
nQueryCount=39, nCacheCount=231
nCorrect=5
-------------------------
GetDistances::(multiples) NW=5
2014 7 2 15 25 40.952
ONAC001,ONAC003,ONAC005,ONAC014,ONAC028,ONAC010,ONAC016,ONAC024,ONAC058,ONAC088,nQueryCount=141, nCacheCount=339
[0 5;0 5]
-------------------------
GetDistances::(multiples) NW=5
2014 7 2 15 31 4.826
SwObihiro92,Leningrad91,Stockholm90,Yamagata89,SwNebraska92,SwStHyacinthe91,SwQuebec90,SwIowa88,nQueryCount=92, nCacheCount=228
[0 4;0 4]
-------------------------
GetDistances::(multiples) NW=5
<<<<<<< HEAD
2014 8 12 11 31 57.976
red,orange,yellow,green,blue,indigo,lion,tiger,bear,monkey,zebra,elephant,aardvark,lamb,fox,ape,dog,nQueryCount=389, nCacheCount=903
[6 0;0 11]
=======
2014 7 7 15 3 13.02
brm,CG17652,BRWD3,Hem,br,velo,E2f,Dp,ctp,nQueryCount=116, nCacheCount=280
[2 2;0 5]
>>>>>>> bef2f507c6358a5ceee1c070702fd6d9ada135b7
-------------------------
GetDistances::(pairs)
<<<<<<< HEAD
2014 8 12 11 33 12.318
red,orange,yellow,green,blue,indigo,lion,tiger,bear,monkey,zebra,elephant,aardvark,lamb,fox,ape,dog,kGap=2
nQueryCount=136, nCacheCount=680
nCorrect=17
=======
2014 7 7 15 3 24.91
brm,CG17652,BRWD3,Hem,br,velo,E2f,Dp,ctp,kGap=1
nQueryCount=30, nCacheCount=186
nCorrect=6
>>>>>>> bef2f507c6358a5ceee1c070702fd6d9ada135b7
-------------------------
GetDistances::(multiples) NW=5
<<<<<<< HEAD
2014 8 12 11 36 37.787
red,orange,yellow,green,blue,indigo,violet,purple,tan,white,square,circle,rectangle,ellipse,triangle,rhombus,nQueryCount=342, nCacheCount=810
[9 1;0 6]
=======
2014 7 7 15 4 40.842
Cap-G,aub,vas,neb,br,velo,E2f,Dp,ctp,nQueryCount=75, nCacheCount=321
[1 3;1 4]
>>>>>>> bef2f507c6358a5ceee1c070702fd6d9ada135b7
-------------------------
GetDistances::(pairs)
<<<<<<< HEAD
2014 8 12 11 37 33.886
red,orange,yellow,green,blue,indigo,violet,purple,tan,white,square,circle,rectangle,ellipse,triangle,rhombus,kGap=2
nQueryCount=105, nCacheCount=615
nCorrect=16
=======
2014 7 7 15 4 48.483
Cap-G,aub,vas,neb,br,velo,E2f,Dp,ctp,kGap=1
nQueryCount=20, nCacheCount=196
nCorrect=5
>>>>>>> bef2f507c6358a5ceee1c070702fd6d9ada135b7
-------------------------
GetDistances::(multiples) NW=5
<<<<<<< HEAD
2014 8 12 11 39 45.674
Barack Obama,Hillary Clinton,John Edwards,Joe Biden,Chris Dodd,Mike Gravel,John McCain,Mitt Romney,Mike Huckabee,Ron Paul,Fred Thompson,Alan Keyes,nQueryCount=198, nCacheCount=474
[6 0;0 6]
=======
2014 7 25 6 22 5.7
Actin,Arp2/3,Coronin,Dystrophin,FtsZ,Keratin,Cadherin,Ependymin,Integrin,NCAM,Selectin,nQueryCount=168, nCacheCount=404
[4 2;3 2]
>>>>>>> bef2f507c6358a5ceee1c070702fd6d9ada135b7
-------------------------
GetDistances::(pairs)
<<<<<<< HEAD
2014 8 12 11 40 28.955
Barack Obama,Hillary Clinton,John Edwards,Joe Biden,Chris Dodd,Mike Gravel,John McCain,Mitt Romney,Mike Huckabee,Ron Paul,Fred Thompson,Alan Keyes,kGap=2
nQueryCount=66, nCacheCount=330
nCorrect=7
=======
2014 7 25 6 22 36.598
Actin,Arp2/3,Coronin,Dystrophin,FtsZ,Keratin,Cadherin,Ependymin,Integrin,NCAM,Selectin,kGap=1
nQueryCount=55, nCacheCount=275
nCorrect=7
-------------------------
GetDistances::(multiples) NW=5
2014 7 25 6 24 12.565
Actin,Arp2/3,Coronin,Dystrophin,FtsZ,Keratin,Cadherin,Ependymin,Integrin,NCAM,Selectin,nQueryCount=0, nCacheCount=572
[4 2;3 2]
-------------------------
GetDistances::(pairs)
2014 7 25 6 24 14.609
Actin,Arp2/3,Coronin,Dystrophin,FtsZ,Keratin,Cadherin,Ependymin,Integrin,NCAM,Selectin,kGap=1
nQueryCount=0, nCacheCount=330
nCorrect=7
-------------------------
GetDistances::(multiples) NW=5
2014 7 25 6 59 53.568
cytoskeleton,Actin,Arp2/3,Coronin,Dystrophin,FtsZ,Keratin,adhesion,Cadherin,Ependymin,Integrin,NCAM,Selectin,nQueryCount=232, nCacheCount=548
[5 2;4 2]
-------------------------
GetDistances::(pairs)
2014 7 25 7 0 26.173
cytoskeleton,Actin,Arp2/3,Coronin,Dystrophin,FtsZ,Keratin,adhesion,Cadherin,Ependymin,Integrin,NCAM,Selectin,kGap=1
nQueryCount=78, nCacheCount=390
nCorrect=7
-------------------------
GetDistances::(multiples) NW=5
2014 7 25 11 26 29.498
DRD2,GRM3,GRIN2A,SRR,SNCA,LRRK2,PINK1,ATP13A2,nQueryCount=87, nCacheCount=233
[3 1;4 0]
-------------------------
GetDistances::(pairs)
2014 7 25 11 26 36.154
DRD2,GRM3,GRIN2A,SRR,SNCA,LRRK2,PINK1,ATP13A2,kGap=1
nQueryCount=16, nCacheCount=152
nCorrect=7
-------------------------
GetDistances::(pairs)
2014 7 25 11 28 39.277
DRD2,GRM3,GRIN2A,SRR,SNCA,LRRK2,PINK1,ATP13A2,kGap=1
nQueryCount=6, nCacheCount=196
nCorrect=7
-------------------------
GetDistances::(multiples) NW=5
2014 7 25 11 35 8.274
Schizophrenia,DRD2,GRM3,GRIN2A,SRR,Parkinsons,LRRK2,PINK1,ATP13A2,MAPT,nQueryCount=105, nCacheCount=375
[5 0;2 3]
-------------------------
GetDistances::(multiples) NW=5
2014 7 25 11 52 50.767
Schizophrenia,DRD2,GRM3,GRIN2A,SRR,CACNA1I,RIMS1,KCTD13,Parkinsons,LRRK2,PINK1,ATP13A2,MAPT,SNCA,HLA-DRB5,BST1,GAK,nQueryCount=376, nCacheCount=916
[8 0;1 8]
-------------------------
GetDistances::(multiples) NW=5
2014 7 25 11 55 21.349
DRD2,GRM3,GRIN2A,SRR,CACNA1I,RIMS1,KCTD13,LRRK2,PINK1,ATP13A2,MAPT,SNCA,HLA-DRB5,BST1,GAK,nQueryCount=244, nCacheCount=776
[4 3;5 3]
-------------------------
GetDistances::(multiples) NW=5
2014 7 25 15 19 39.235
DRD2,GRM3,GRIN2A,SRR,CACNA1I,RIMS1,KCTD13,LRRK2,PINK1,ATP13A2,MAPT,SNCA,HLA-DRB5,BST1,GAK,ACMSD,STK39,MCCC1/LAMP3,SYT11,CCDC62/HIP1R,nQueryCount=390, nCacheCount=1370
[3 4;8 5]
-------------------------
GetDistances::(multiples) NW=5
2014 8 4 16 2 31.248
rs17483466,rs13397985,rs757978,rs872071,rs2456449,rs735665,rs6939340,rs4712653,rs3768716,rs7585356,rs2070094,rs2229571,nQueryCount=199, nCacheCount=473
[6 0;2 4]
-------------------------
GetDistances::(multiples) NW=5
2014 8 4 16 23 16.536
rs17483466,rs13397985,rs757978,rs872071,rs2456449,rs735665,rs4420638,rs7561528,rs17817600,rs3748140,rs12808148,rs6856768,rs11738335,rs1357692,nQueryCount=161, nCacheCount=735
[3 3;5 3]
-------------------------
GetDistances::(multiples) NW=5
2014 8 4 16 41 56.569
red,orange,yellow,green,blue,indigo,lion,tiger,bear,monkey,zebra,elephant,nQueryCount=199, nCacheCount=473
[0 6;0 6]
-------------------------
GetDistances::(multiples) NW=5
2014 8 4 16 42 20.597
red,orange,yellow,green,blue,indigo,lion,tiger,bear,monkey,zebra,elephant,nQueryCount=0, nCacheCount=672
[0 6;0 6]
-------------------------
GetDistances::(multiples) NW=5
2014 8 4 17 2 36.636
red,orange,yellow,green,blue,indigo,lion,tiger,bear,monkey,zebra,elephant,nQueryCount=191, nCacheCount=481
[6 0;1 5]
-------------------------
GetDistances::(pairs)
2014 8 4 17 5 6.979
red,orange,yellow,green,blue,indigo,lion,tiger,bear,monkey,zebra,elephant,kGap=2
nQueryCount=66, nCacheCount=330
nCorrect=9
>>>>>>> bef2f507c6358a5ceee1c070702fd6d9ada135b7
rr.xls 0 → 100644
+ 0
− 0
View file @ 14e63f51
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