check isdeployed on path in setExtFamilyGT

src/goChallenge.m

@@ -38,7 +38,7 @@ end
 
 if isempty(config)
     % secondary track
-    ctcEraseAll(strDB);
+%     ctcEraseAll(strDB);
     Batch.processMovie(strDB);
     if contains(strDB,'Huh7')
         % the huh7 segmentation gets a postprocess refine to better match whatever

src/importExport.m

@@ -129,7 +129,7 @@ for i=1:length(tids)
     
     tBegin=q{1};
     tEnd=q{2};
-    if isempty(tBegin) || isempty(tEnd) || strcmp(tBegin,'null') || strcmp(tEnd,'null')
+    if isempty(tBegin) || isempty(tEnd) || strcmp(tBegin,'null') || strcmp(tEnd,'null') || isnan(tBegin) || isnan(tEnd)
         continue
     end
     % find our parent

src/setExtFamilyGT.m

@@ -39,7 +39,9 @@ for i=1:length(groundTruthCells)
         overlap(i,j)=length(intersect(groundTruthCells(i).idx,segCells(j).idxPts));
     end
 end
+if ~isdeployed
     path(path,'./assignment');
+end
 cc=1./overlap;
 ass=assignmentoptimal(cc);
 trackAssign=[];