get ljsctc generic comments

src/get_ljsctc_generic.m

-% % see comments in get_ljsctc
-% % here we provide a generic version, based on the following file structure:
-% % -----------------------------------------------------------------------------------------
-% % - ROOT/Fluo-C3DL-MDA231
-% %   > 01
+%  *** alternate  version of ljsctc
+%   see comments in get_ljsctc
+%  here we provide a generic version, based on the following file structure:
+%  e.g.
+%  -----------------------------------------------------------------------------------------
+%   - ROOT/Fluo-C3DL-MDA231
+%     > 01
 %         · images...
 %     > 01_GT
 %         - SEG
@@ -57,6 +59,8 @@ else
     % correctly. our default is to read it from the raw image tiffs, but
     % for some of the ctc movies that value is set incorrectly!
     %
+    % you may want to experiment a bit with segParams - the
+    % minimumRadius_um and sensitivty params are the main ones to look at.
 end
 % which ground truth to use, and where to write exported output
 ljsctc.gtConfig='GT';
@@ -70,8 +74,8 @@ ljsctc.gtTrainingPath=fullfile(ROOT,dsName,'**/*_ST/man_seg*.tif');
 % ljsctc.gtTrainingPath=[];
 % if you want to check the training path:
 fprintf(1,'ljsctc found %d training images\n',length(dir(ljsctc.gtTrainingPath)));
-bEvalTrainingMovie=false;
-if bEvalTrainingMovie
+bEval=false;
+if bEval
     % this is passed to CTC scoring code
     % only set this if you want to have the CTC SEG,TRA and DET scores
     % generated (i.e. if you have a training movie