goCTC uses buildWrangle

src/buildWrangleFile.m

@@ -12,7 +12,9 @@ else
     system(['node ' eraseAll ' ' strTarget]);
 end
 [conn,CONSTANTS]=openDB(strTarget);
+if exist('segParams','var') && ~isempty(segParams)
     Write.setSegParams(conn,segParams);
+end
 % set source image dir
 [imageDir,dsName,~]=fileparts(strDB);
 CONSTANTS.imageData.imageDir=imageDir;

src/goCTC.m

 % goctc.m - run ctc training or challenge. 
 if isunix()
-    ROOT='/g/leverjs/ctc2021/';
+    ROOT='/g/leverjs/ctc2021ap/';
+    outfolder='/g/leverjs/ctc2021_wrangle';
 else
     ROOT='g:/leverjs/ctc2021/';
+    outfolder='g:/leverjs/ctc2021_wrangle';
 end
-target='3d/*N3DH-CE*.LEVER';
+
+if ~exist(outfolder,'dir')
+    mkdir(outfolder)
+end
+target='**/*training*.LEVER';
 resFolder='./ctcResults';
 if ~exist(resFolder,'dir')
     mkdir(resFolder);
@@ -16,18 +22,18 @@ res=table();
 for ff=1:length(flist)
     strDB=fullfile(flist(ff).folder,flist(ff).name);
     ljsLog(sprintf('starting movie %s',strDB));
-    tp=tic();
-    pr=Batch.processMovie(strDB,false,84);
-    tElapsed=toc(tp);
-    ljsLog(sprintf('fini movie %s tElapsed=%.0f',strDB,tElapsed));   
+    
+    [ROOT,dsName]=fileparts(strDB);
+    strTarget=buildWrangleFile(strDB,outfolder,dsName,[]);
+    Batch.processMovie(strTarget);   
+    
     if isempty(strfind(flist(ff).name,'training'))
         continue
     end
-    rx=ctcEval1(strDB);
+    rx=ctcEval1(strTarget);
     if isempty(rx)
         continue
     end    
-    rx.tProcessMovie=tElapsed;
     res=[res;rx]
 end