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Commit 4f9e44d8 authored by ac (tb)'s avatar ac (tb)
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added ctc_doc/readme.txt

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......@@ -6,3 +6,4 @@ ctc/importExport/generatedBats/*.bat
*.m~
ljs_git_out.tmp
mccExcludedFiles.log
!ctc_doc/readme.txt
\ No newline at end of file
leverjs software fo cell tracking challenge 2021 second submission
primary and secondary tracks
layton aho, raymond yung and andrew r. cohen
andrew.r.cohen@drexel.edu
June, 2021
NOTES
- the uploaded executables have been modified to use Linux .sh files. the implementation is tested on Ubuntu 20.04.
prerequisites:
- matlab 2019b mcr runtime is assumed to be installed in '/usr/local/MATLAB/MATLAB_Runtime/v97'. if this is not the correct path,
the .sh files will need to be modified easily with the correct path or possibly a softlink could be added.
the runtime is available here:
https://ssd.mathworks.com/supportfiles/downloads/R2019b/Release/8/deployment_files/installer/complete/glnxa64/MATLAB_Runtime_R2019b_Update_8_glnxa64.zip
- mpich is required: 'sudo apt install mpich'
performance notes:
- running any batch script for the first time will cause *all* of the movies to be imported to the LEVER format and denoised. this is going to
be quite slow, but it will only happen once.
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