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Commit 3e7fe5e9 authored by ac_cx's avatar ac_cx
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new goWrangleCTC

parent f82a58d5
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outfolder = '/f/leverjs/g/ctc2021_wrangle';
if ~exist(outfolder,'dir')
mkdir(outfolder);
end
% (re)-run strDB to targetWrangle
strDB='/f/leverjs/g/ctc2021ap/2d/Fluo-N2DL-HeLa_training_01.LEVER';
[~,dsName,~] = fileparts(strDB);
[conn,CONSTANTS,segParams] = openDB(strDB);
close(conn);
segParams.minimumRadius_um = [1, 0.2, 3];
targetWrangle = Helpers.buildWrangleFile(strDB,outfolder,dsName,segParams);
Batch.processMovie(targetWrangle,false,18);
% for eval, need ljsctc
expName='2d_Fluo-N2DL-HeLa_training_01';
ljsctc = get_ljsctc(expName);
ctcEval(targetWrangle,[],ljsctc.outPath,ljsctc.gtEvalPath,ljsctc.gtConstraintPath);
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