updated readme with new leverUtiltiies info

matlab/+Segment/CellDistance.m

@@ -76,7 +76,7 @@ for nChannel=1:CONSTANTS.imageData.NumberOfChannels
                     if (min([size(pts0,1),size(pts1,1)])/max([size(pts0,1),size(pts1,1)])) <0.1
                         continue
                     end
-                    MIN_MAHAL_POINTS=15
+                    MIN_MAHAL_POINTS=15;
                     if size(pts0,1)<MIN_MAHAL_POINTS && size(pts1,1)<MIN_MAHAL_POINTS
                         d12=max([size(pts0,1),size(pts1,1)])*d;
                         d21=d12;

readme.md

@@ -51,18 +51,19 @@ this is for windows 64 only. no admin account credentials required. there's a le
 <h2>installation</H2>
 
 2. start a node.js command prompt
-3. git clone https://git-bio....
-4. cd leverjs
-5. npm update
-6. npm run postinstall
+3. git clone git@git-bioimage.coe.drexel.edu:opensource/leverjs.git
+4. git clone git@git-bioimage.coe.drexel.edu:opensource/leverUtilities.git
+5. cd leverjs
+6. npm update
+7. npm run postinstall
 
-7. now you can run the electron app:
+8. now you can run the electron app:
 
 npm start
 
 and import microscope files
 
-8. or start the server
+9. or start the server
 
 node server.js --port=3000 /path/to/.leverFiles
 
@@ -94,7 +95,11 @@ client side javascript.
 see the scripting tab in the electron (stand-alone) image window for more details...
 
 <h1>security</h1>
-security is designed into leverjs at every level, from the firewall, to the nginx reverse proxy, to auth0 (https://auth0.com) user api tokens, to programmatic access tokens using private/public key signing. more details to follow soon...
+security is designed into leverjs at every level, from the firewall, to the nginx reverse proxy, to auth0 (https://auth0.com) user api tokens, to programmatic access tokens using private/public key signing. more details to follow soon...the most secure route is to use the electron app for all your processing. 
 
-in the interim, to access the api functionality, you can use auth0 for use authentication (details TBD) or you can generate your own keys for programmatic authentication (run node.exe leverjs\keyGen.js, see matlab\+Client for examples).
+Alternatively, to access the api functionality, you can use auth0 for use authentication. you will need
+to create an auth0.com account and application key (more details TBD). Alternatively, if you start the lever server with no security (node server.js --secure=false ...) you can then use your firewall to limit
+incoming connections on the server port to localhost only (easiest but not very secure).
+
+You can also generate your own keys for programmatic authentication (run node.exe leverjs\keyGen.js, see matlab\+Client for examples).