LoG areaopen at 2*radius, check deployed on ljsPath

matlab/+Segment/thresholdImages.m

@@ -30,7 +30,7 @@ end
 nsz=4*floor(size(im)/16)+1;
 T=adaptthresh(imLog,0.5,'NeighborhoodSize',nsz,'statistic','gaussian');
 bwLog=imbinarize(imLog,T);
-bwLog=Segment.aiAreaOpen(bwLog,min_radius_pixels);
+bwLog=Segment.aiAreaOpen(bwLog,2*min_radius_pixels);
 
 nsz=4*floor(size(im)/16)+1;
 T=adaptthresh(im,sensitivity,'NeighborhoodSize',nsz,'statistic','gaussian');

matlab/getLeverjsPath.m

 
 function ljsPath=getLeverjsPath(file)
 
+if isdeployed()
+    thisFolder=fullfile(pwd(),'matlab');
+else
     thisFile=mfilename('fullpath');
     [thisFolder,~,~]=fileparts(thisFile);
+end
 ljsPath=fullfile(thisFolder,'..','leverjs',file);
 if ~exist(ljsPath,'file')
     ljsPath=fullfile(thisFolder,'..',file);
 end
 if ~exist(ljsPath,'file')
-    fprintf(2,'getLeverjsPath:: could not locate %s\n',file);    
+    ljsPath=fullfile(thisFolder,file);
+end
+if ~exist(ljsPath,'file')
+    fprintf(2,'getLeverjsPath:: could not locate file in %s in folder %s\n',file,thisFolder);    
+    ljsPath=[];
 end

matlab/ljsLog.m

@@ -15,6 +15,7 @@ if isempty(timerVal) || isempty(configLevel) || elapsedTime>10
     configLevel=1;
     if ~isempty(fname)
         fid=fopen(fname,'r');        
+        if fid~=-1
             jsConfig=fscanf(fid,'%s\n');
             fclose(fid);
             jsConfigLevel=regexp(jsConfig,'logLevel=\d*[^;]','match');
@@ -23,6 +24,7 @@ if isempty(timerVal) || isempty(configLevel) || elapsedTime>10
             end
         end
     end
+end
 timerVal=tic();
 if level<=configLevel
     fprintf(1,'%s\n',text);

matlab/matlabPollDB.m

@@ -13,6 +13,8 @@ fprintf(1,'matlabPollDB pid=%d\n',pid);
 AddSQLiteToPath();
 hipCheckSetRegistry();
 
+ljsLog(['matlabPollDB:: HIP mutex from OS: ' getenv('HYDRA_ENABLE_MUTEX')],1);
+
 warning('off','all');
 
 if nargin>1