Merge branch 'log_seg' of git-bioimage.coe.drexel.edu:bioimage/leverjs into log_seg

matlab/+SSF/channel_distances.m

@@ -2,11 +2,15 @@
 % ERK_CHANNEL = 1;
 % AKT_CHANNEL = 2;
 % VELOCITY_CHANNEL = 4; 
-function res = channel_distances(flist,classList,channel1,channel2,clipLimits)
+function res = channel_distances(flist,classList,channel1,channel2,clipLimits,tClip)
 res=table();
 
+if ~exist('tClip','var')
+    tClip = [];
+end
+
 if ~exist('clipLimits','var') || isempty(clipLimits)
-    clipLimits = SSF.getClipLimits(flist,[channel1,channel2]);
+    clipLimits = SSF.getClipLimits(flist,[channel1,channel2],0,tClip);
 end
 
 parfor ff = 1:length(flist)    
@@ -15,8 +19,8 @@ parfor ff = 1:length(flist)
     nr = table();
     
     strDB = fullfile(flist(ff).folder,flist(ff).name);
-    im1 = SSF.loadImage(strDB,channel1);  
-    im2= SSF.loadImage(strDB,channel2);   
+    im1 = SSF.loadImage(strDB,channel1,0,tClip);  
+    im2= SSF.loadImage(strDB,channel2,0,tClip);   
     
     im1 = SSF.quantize8(im1,clipLimits{ff,1});
     im2 = SSF.quantize8(im2,clipLimits{ff,2});