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Commit 1ae13ec7 authored by Andrew Cohen's avatar Andrew Cohen
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DenoiseCache.getImages parameter order

parent 0b4ba03c
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...@@ -17,15 +17,15 @@ end ...@@ -17,15 +17,15 @@ end
global USE_CUDA global USE_CUDA
USE_CUDA=segParams.useCuda&&~ismac && HIP.Cuda.DeviceCount>0; USE_CUDA=segParams.useCuda&&~ismac && HIP.Cuda.DeviceCount>0;
imCache.im =DenoiseCache.readImages(CONSTANTS,time,segParams); imCache.im =DenoiseCache.readImages(time,CONSTANTS,segParams);
imCache.imM1 =DenoiseCache.readImages(CONSTANTS,time-1,segParams); imCache.imM1 =DenoiseCache.readImages(time-1,CONSTANTS,segParams);
if time>2 if time>2
imCache.imM2 =DenoiseCache.readImages(CONSTANTS,time-2,segParams); imCache.imM2 =DenoiseCache.readImages(time-2,CONSTANTS,segParams);
else else
imCache.imM2=[]; imCache.imM2=[];
end end
if time<CONSTANTS.imageData.NumberOfFrames if time<CONSTANTS.imageData.NumberOfFrames
imCache.imP1 =DenoiseCache.readImages(CONSTANTS,time+1,segParams); imCache.imP1 =DenoiseCache.readImages(time+1,CONSTANTS,segParams);
else else
imCache.imP1=[]; imCache.imP1=[];
end end
...@@ -44,7 +44,7 @@ resolution_um=CONSTANTS.imageData.PixelPhysicalSize; % um per pixel ...@@ -44,7 +44,7 @@ resolution_um=CONSTANTS.imageData.PixelPhysicalSize; % um per pixel
min_radius_pixels = segParams.minimumRadius_um ./ resolution_um; min_radius_pixels = segParams.minimumRadius_um ./ resolution_um;
chan=segParams.channels(1); % default channel chan=segParams.channels(1); % default channel
[im,imLog]=DenoiseCache.readImage(CONSTANTS,t,segParams,medianMask); [im,imLog]=DenoiseCache.readImages(t,CONSTANTS,segParams,medianMask);
if all(im(:)==0) if all(im(:)==0)
ljsLog(sprintf('frameSegment: empty image at time=%d -- skipping\n',t)); ljsLog(sprintf('frameSegment: empty image at time=%d -- skipping\n',t));
return; return;
......
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