fill kernel holes on segreduce, built matlabpolldb

matlab/+Segment/frameSegment.m

@@ -172,7 +172,7 @@ if bEnsemble
 end 
 tElapsed=toc;
 
-sz=sprintf('segmented frame %d found %d hulls, useCuda=%d, time=%f\n',t,length(Cells),USE_CUDA,tElapsed);
+sz=sprintf('segmented frame %d found %d hulls, useCuda=%d, minRadius=%f time=%f\n',t,length(Cells),USE_CUDA,segParams.minimumRadius_um,tElapsed);
 ljsLog(sz,3);
 if DRAW
     title([num2str(tElapsed,'%0.0f') 'seconds']);

matlab/+Segment/segReduce.m

@@ -16,6 +16,7 @@ bwOut=bw;
 nIter=pi*max(min_radius_pixels)/2;
 for nDilate=1:nIter
     bwKernels=bwOut&~bwLog;
+    bwKernels=imfill(bwKernels,'holes');    
     bwKernels=Segment.aiAreaOpen(bwKernels,0.5*min_radius_pixels);  
   
     L=bwlabeln(bwKernels);