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Commit aa93e318 authored by Eric Wait's avatar Eric Wait
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Smooth second pannel in movie if no processed image is created

parent 9f29cf3c
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%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%% %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
%% User Settings %% User Settings
imD = MicroscopeData.ReadMetadata(); imD = MicroscopeData.ReadMetadata();
movieTime = 12; movieTime = max(min(imD.NumberOfFrames*0.25,12),3);
fps = 30; fps = 30;
spinTimes = 1; spinTimes = 1;
pauseTime = 0.5; pauseTime = 0.5;
...@@ -176,6 +176,14 @@ for j=1:2 ...@@ -176,6 +176,14 @@ for j=1:2
if (j==1) if (j==1)
im = MicroscopeData.Reader('imageData',imD,'imVersion','Processed'); im = MicroscopeData.Reader('imageData',imD,'imVersion','Processed');
if (isempty(im))
im = MicroscopeData.Reader('imageData',imD);
for t=1:imD.NumberOfFrames
for c=1:imD.NumberOfChannels
im(:,:,:,c,t) = ImProc.MeanFilter(im(:,:,:,c,t),[3,3,3]);
end
end
end
end end
end end
prgs.ClearProgress(true); prgs.ClearProgress(true);
......
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