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Commit 14e31fe4 authored by Eric Wait's avatar Eric Wait
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Deal more gracefully when original data does not have Z pixel dimention

parent 7ce50364
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......@@ -32,7 +32,11 @@ for series=0:bfReader.getSeriesCount()-1
xPixelPhysicalSize = omeMetadata.getPixelsPhysicalSizeX(0).value(ome.units.UNITS.MICROMETER).doubleValue();
yPixelPhysicalSize = omeMetadata.getPixelsPhysicalSizeY(0).value(ome.units.UNITS.MICROMETER).doubleValue();
if (isempty(omeMetadata.getPixelsPhysicalSizeZ(0)))
zPixelPhysicalSize = 1;
else
zPixelPhysicalSize = omeMetadata.getPixelsPhysicalSizeZ(0).value(ome.units.UNITS.MICROMETER).doubleValue();
end
imageData.PixelPhysicalSize = [xPixelPhysicalSize, yPixelPhysicalSize, zPixelPhysicalSize];
......
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