Mark Winter authored 12 years ago and Eric Wait committed 12 years ago

Added "origin" action which verifies the initial core data structure hashes match. Also removed hashing after every edit.

Mark Winter authored 12 years ago and Eric Wait committed 12 years ago

Store and set random stream state before each edit action that may run the gmdistribution fit, this ensures that results are reproduced exactly.

Mark Winter authored 12 years ago and Eric Wait committed 12 years ago

If family specified is past end of family list (happens in undo/redo occasionally) then just draw the largest family.

Mark Winter authored 12 years ago and Eric Wait committed 12 years ago

Modified phenotype handling, particularly with respect to updating the menus, this should avoid the possibility of undo and redo causing menus to be out of sync with current phenotype state.

Updated integrity check to give slightly clearer error messages and to avoid spurious reference errors.

Fix so that initial split tracking ignores graph-edited edges (stops tracking from removing a user-edited mitosis event).

Fix for cached-cost handling, appropriately zeros edges from a graph-edited hull. Also ignores deleted hulls.

Segmentation code now reads image size into CONSTANTS.imageSize early on and all post-segmentation routines use that size for indexing.

Unified split/add/merge hull code somewhat, also modified tracking and cost-matrix code to speed up calls to GetCostMatrix and GetCostSubmatrix.