added time parameter to Segmentation.PartialImageSegment()

src/MATLAB/+Segmentation/+MitosisEditor/FindChildrenHulls.m

@@ -279,7 +279,7 @@ function objs = partialSegObjs(chkPoint, time)
     filename = Helper.GetFullImagePath(time);
     img = Helper.LoadIntensityImage(filename);
 
-    objs = Segmentation.PartialImageSegment(img, chkPoint, 200, 1.0);
+    objs = Segmentation.PartialImageSegment(img, chkPoint, 200, 1.0, time);
 end
 
 function updateLocalTracking(newHulls, hullTime)

src/MATLAB/+Segmentation/+MitosisEditor/FindParentHull.m

@@ -57,7 +57,7 @@ function parentHull = addParentHull(midpoint, time, mitosisPoints)
     filename = Helper.GetFullImagePath(time);
     img = Helper.LoadIntensityImage(filename);
     
-    objs = Segmentation.PartialImageSegment(img, midpoint, 200, 1.0);
+    objs = Segmentation.PartialImageSegment(img, midpoint, 200, 1.0, time);
     
     pointCounts = zeros(1,length(objs));
     for i=1:length(objs)

src/MATLAB/+Segmentation/+ResegFromTree/AddSegmentation.m

@@ -14,7 +14,7 @@ function [addedHull costMatrix nextHulls] = AddSegmentation(prevHull, costMatrix
     
     guessPoint = [CellHulls(prevHull).centerOfMass(2) CellHulls(prevHull).centerOfMass(1)];
     
-    newObj = Segmentation.FindNewSegmentation(img, guessPoint, 200, 1.0, CellHulls(prevHull).indexPixels);
+    newObj = Segmentation.FindNewSegmentation(img, guessPoint, 200, 1.0, CellHulls(prevHull).indexPixels, time);
     
     if ( isempty(newObj) )
         if ( ~bAggressive )
@@ -22,7 +22,7 @@ function [addedHull costMatrix nextHulls] = AddSegmentation(prevHull, costMatrix
         end
         
         for tryAlpha = 0.95:(-0.05):0.5
-            newObj = Segmentation.FindNewSegmentation(img, guessPoint, 200, tryAlpha, CellHulls(prevHull).indexPixels);
+            newObj = Segmentation.FindNewSegmentation(img, guessPoint, 200, tryAlpha, CellHulls(prevHull).indexPixels, time);
             if ( ~isempty(newObj) )
                 break;
             end

src/MATLAB/+Segmentation/AddNewSegmentHull.m

@@ -30,12 +30,12 @@ function newTrackID = AddNewSegmentHull(clickPt, time)
     filename = Helper.GetFullImagePath(time);
     img = Helper.LoadIntensityImage(filename);
     
-    [newObj newFeat] = Segmentation.FindNewSegmentation(img, clickPt, 200, 1.0);
+    [newObj newFeat] = Segmentation.FindNewSegmentation(img, clickPt, 200, 1.0, [], time);
     
     % Aggressive add segmentation
     if ( isempty(newObj) )
         for tryAlpha = 1.25:(-0.05):0.5
-            [newObj newFeat] = Segmentation.FindNewSegmentation(img, clickPt, 200, tryAlpha);
+            [newObj newFeat] = Segmentation.FindNewSegmentation(img, clickPt, 200, tryAlpha, [], time);
             if ( ~isempty(newObj) )
                 break;
             end

src/MATLAB/+Segmentation/FindNewSegmentation.m

 
-function [hull feature] = FindNewSegmentation(img, centerPt, subSize, alpha, overlapPoints)
+function [hull feature] = FindNewSegmentation(img, centerPt, subSize, alpha, overlapPoints, time)
     if ( ~exist('overlapPoints', 'var') )
         overlapPoints = [];
     end
     
-    [objs features] = Segmentation.PartialImageSegment(img, centerPt, subSize, alpha);
+    [objs features] = Segmentation.PartialImageSegment(img, centerPt, subSize, alpha, time);
     
     if ( isempty(overlapPoints) )
         bInHull = Hulls.CheckHullsContainsPoint(centerPt, objs);

src/MATLAB/+Segmentation/PartialImageSegment.m

@@ -25,7 +25,7 @@
 %
 %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
 
-function [hulls features] = PartialImageSegment(img, centerPt, subSize, alpha)
+function [hulls features] = PartialImageSegment(img, centerPt, subSize, alpha, time)
     global CONSTANTS
 
     if ( length(subSize) < 2 )