fix the splitting pixels list

src/matlab/CreateHulls.m

@@ -18,7 +18,7 @@
 %LEVer in file "gnu gpl v3.txt".  If not, see  <http://www.gnu.org/licenses/>.
 %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
 
-function [ newHulls ] = CreateHulls(bwIm, orgIm, minCellDia, frame, minXY, minZ)
+function [ newHulls ] = CreateHulls(bwIm, orgIm, minCellDia, frame, minXY, minZ, labeledIm)
 global imageData
 
 newHulls = [];
@@ -29,6 +29,9 @@ end
 if ~exist('minZ','var')
     minZ = 0;
 end
+if ~exist('labeledIm','var')
+    labeledIm = 0;
+end
 
 [newHulls,~,~] = GetEmptyStructs();
 imageDims = [imageData.XDimension, imageData.YDimension, imageData.ZDimension];
@@ -37,7 +40,11 @@ scaleFactor  =  imageDims ./ max(imageDims) .* physDims/physDims(1);
 imDiv = imageDims /2;
 minCellVol = (4*pi*(minCellDia/2)^3)/3;
 
+if (labeledIm==0)
     cc = bwconncomp(bwIm);
+else
+    cc = bwIm;
+end
 stts = regionprops(cc,orgIm,'BoundingBox','PixelList','WeightedCentroid');
 if isempty(stts)
     return

src/matlab/SplitHull.m

@@ -27,7 +27,7 @@ for i=1:k
     im(idx) = i;
 end
 
-newHulls = CreateHulls(im,orgImage(:,:,:,hullChan,Hulls(hull).frame),1,Hulls(hull).frame);
+newHulls = CreateHulls(im,orgImage(:,:,:,hullChan,Hulls(hull).frame),1,Hulls(hull).frame,0,0,1);
 
 oldHull = Hulls(hull);
 Hulls(hull) = newHulls(1);