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repository for paper in review. code will be released free and open source (license tbd) when manuscript is accepted. contact andyrcohen@outlook.com for more info.

Cuda Kernels with Mex wrapper to process 3-D images

leverjs is the new new. it combines our previous LEVER and CloneView projects into a single set of software tools for working with live cell & tissue microscopy images.

source code for static lib or dll bzip2 goes with the MultisetNCD, AITP and GapSpectral projects

source code for A.R.Cohen and P.M.B. Vitanyi, Normalized Compression Distance of Multisets with Applications, IEEE Transactions on Pattern Analysis and Machine Intelligence. 2014.

source code from A.R. Cohen, C. Bjornsson, S. Temple, G. Banker, and B. Roysam, "Automatic Summarization of Changes in Biological Image Sequences using Algorithmic Information Theory". IEEE TPAMI, 2009. 31(8)

source code from "Axonal transport analysis using Multitemporal Association Tracking." Int J Comput Biol Drug Des. 2012;5(1):35-48.

source code from E. Wait, et al., Visualization and Correction of Automated Segmentation, Tracking and Lineaging from 5-D Stem Cell Image Sequences. BMC Bioinformatics, 2014.

source code for Algorithmic Information Theoretic Prediction and Discovery from Cohen et al., Computational prediction of neural progenitor cell fates, Nature Methods, 2010.