Explore projects

source code from E. Wait, et al., Visualization and Correction of Automated Segmentation, Tracking and Lineaging from 5-D Stem Cell Image Sequences. BMC Bioinformatics, 2014.

open source release for Joshi, et al., "Automated Measurement of Cobblestone Morphology for Characterizing Stem Cell-Derived Retinal Pigment Epithelial Cell Cultures", Journal of Occular Pharmacology and Therapeutics, In press, 2016.

This is the source code for a manuscript currently under review. After the manuscript is accepted, the code will be available open-source (GPL v2). Until then, the code should only be viewed or downloaded by reviewers or editors for evaluation

CloneView HTML5 viewer for LEVER - source from M. Winter, et al.,Computational Image Analysis Reveals Intrinsic Multigenerational Differences Between Anterior and Posterior Cerebral Cortex Neural Progenitor Cells, Stem Cell Reports (2015)

source code for static lib or dll bzip2 goes with the MultisetNCD, AITP and GapSpectral projects

source code from Clark, B., et al., Generation of Rab-based transgenic lines for in vivo studies of endosome biology in zebrafish. Developmental Dynamics, 2011. Blob tracker!

source code for A.R.Cohen and P.M.B. Vitanyi, Normalized Compression Distance of Multisets with Applications, IEEE Transactions on Pattern Analysis and Machine Intelligence. 2014.

source code from "Axonal transport analysis using Multitemporal Association Tracking." Int J Comput Biol Drug Des. 2012;5(1):35-48.

source code for Algorithmic Information Theoretic Prediction and Discovery from Cohen et al., Computational prediction of neural progenitor cell fates, Nature Methods, 2010.