importExport setMissingTrackID for occluded segmentation

src/importExport.m

@@ -244,5 +244,19 @@ idx=find(tctc>=tids(:,3) & tctc<=tids(:,4));
 idsNeeded=tids(idx,2);
 labelsMissing=setdiff(idsNeeded,idsIm);
 if ~isempty(labelsMissing)
-    fprintf(2,'missing track label found!\n');
+    fprintf(2,'occluded segmentation. label=%s time=%d (not a huge deal)\n',mat2str(labelsMissing),t);
+    for i=1:length(labelsMissing)
+        idx=find(tids(:,2)==labelsMissing(i));        
+        cmd=['select centroid from tblCells where trackID=' num2str(tids(idx,1)) ...
+            ' and time=' num2str(t)];
+        q=fetch(conn,cmd);
+        if ~isempty(q)
+            cx=round(jsondecode(q.centroid{1}));
+            if ~is3D(im)
+                cx=cx(1:2);
+            end
+            idxcx=sub2ind(size(im),cx(2),cx(1));
+            im(idxcx)=labelsMissing(i);
+        end
+    end
 end