diff --git a/src/MATLAB/ssf_vs_cn/goFigure3-C.m b/src/MATLAB/ssf_vs_cn/goFigure3-C.m new file mode 100644 index 0000000000000000000000000000000000000000..e69de29bb2d1d6434b8b29ae775ad8c2e48c5391 diff --git a/src/MATLAB/ssf_vs_cn/goPhantomImage.m b/src/MATLAB/ssf_vs_cn/goPhantomImage.m new file mode 100644 index 0000000000000000000000000000000000000000..e69de29bb2d1d6434b8b29ae775ad8c2e48c5391 diff --git a/src/MATLAB/ssf_vs_cn/goSSF_CN.m b/src/MATLAB/ssf_vs_cn/goSSF_CN.m new file mode 100644 index 0000000000000000000000000000000000000000..90c47e34d5b8efa48c841d5b7e7f001645f5af61 --- /dev/null +++ b/src/MATLAB/ssf_vs_cn/goSSF_CN.m @@ -0,0 +1,48 @@ + +sz = [100,100]; +cx = sz./2; +imCN = zeros(sz); +imSSF = zeros(sz); + +for i = 1 : sz(1) + for j = 1 : sz(2) + + cyto = i./sz(1); + nuc = j./sz(2); + + imCN(i,j) = cyto./nuc; + imSSF(i,j) = cyto - nuc; + + end +end + +clf;imagesc(imCN) +xt = get(gca,'xtick') +set(gca,'xticklabels',xt./sz(2)) +yt = get(gca,'ytick') +set(gca,'yticklabels',yt./sz(1)) +ylabel('cytoplasmic intensity') +xlabel('nuclear intensity') + +% tick_targets = [1,64,128,192,255]; +cb = colorbar() +cb.Label.String = 'cytonuclear ratio' + +exportgraphics(gcf,'imCN.png') + +clf;imagesc(imSSF) +xt = get(gca,'xtick') +set(gca,'xticklabels',xt./sz(2)) +yt = get(gca,'ytick') +set(gca,'yticklabels',yt./sz(1)) +ylabel('cytoplasmic intensity') +xlabel('nuclear intensity') + +tick_targets = [-0.99,-0.5,0,0.5,0.99]; +tick_labels = [-1,-0.5,0,0.5,1]; +cb = colorbar('ticks',tick_targets,'ticklabels',tick_labels) +cb.Label.String = 'SSF' + + +exportgraphics(gcf,'imSSF.png') +