diff --git a/manuscript/RSF.tex b/manuscript/RSF.tex index 181c4e351c9dacba6acacb61c765388b4eb79788..a1c6d7bc01ce7e52da4a397bcc0af355f111b388 100644 --- a/manuscript/RSF.tex +++ b/manuscript/RSF.tex @@ -96,6 +96,10 @@ Key recent deep learning papers [Schuman et al.]. Other learning approaches [NNM Key observation -- inherent anisotropy of imaging implements Frangi-like plate filter along the high resolution axis. \subsection{Kolmogorov complexity and the normalized information distance (NID)} + +FLIF \cite{FLIF} \dots + + \subsection{Semi-supervised spectral learning} \subsection{Kolmogorov structure function vs. multi-scale vessel ehancing image filters} $H_{Kolmogorov}$ [Vereschegin and Vitanyi] \emph{vs.} $H_{Frangi}$ diff --git a/manuscript/rsf.bib b/manuscript/rsf.bib index 1fdcd623b2d496385713f9ba0615569b7216e7bd..a78c7f325eac4b59733bf56bc5e600e60056bcc8 100644 --- a/manuscript/rsf.bib +++ b/manuscript/rsf.bib @@ -8,7 +8,7 @@ doi = {10.1109/tpami.2023.3264690} } @article{Cohen2023, - author = {Maska and M. and Ulman and V. and Delgado-Rodriguez and P. and Gomez-de-Mariscal and E. and Necasova and T. and Pena, Guerrero and A., F. and Ren and I., T. and Meyerowitz and M., E. and Scherr and T. and Loffler and K. and Mikut and R. and Guo and T. and Wang and Y. and Allebach and P., J. and Bao and R. and Al-Shakarji and M., N. and Rahmon and G. and Toubal and E., I. and Palaniappan and K. and Lux and F. and Matula and P. and Sugawara and K. and Magnusson and G., K. E. and Aho and L. and Cohen and R., A. and Arbelle and A. and Ben-Haim and T. and Raviv and R., T. and Isensee and F. and Jager and F., P. and Maier-Hein and H., K. and Zhu and Y. and Ederra and C. and Urbiola and A. and Meijering and E. and Cunha and A. and Munoz-Barrutia and A. and Kozubek and M. and Ortiz-de-Solorzano and C.}, + author = {Maska, M. \emph{et al.}}, title = {The Cell Tracking Challenge: 10 years of objective benchmarking}, journal = {Nat Methods}, ISSN = {1548-7105 (Electronic) @@ -19,7 +19,7 @@ type = {Journal Article} } @article{Cohen2022, - author = {Winter and Mark and Cohen and R., Andrew}, + author = {Winter and Mark and Andrew R. Cohen }, title = {LEVERSC: Cross-Platform Scriptable Multichannel 3-D Visualization for Fluorescence Microscopy Images}, journal = {Frontiers in Bioinformatics}, volume = {2}, @@ -30,7 +30,7 @@ type = {Journal Article} } @article{Cohen2019, - author = {Wait and E. and Winter and M. and Cohen and R., A.}, + author = {Wait and E. and Winter and M. and Andrew R. Cohen}, title = {Hydra image processor: 5-D GPU image analysis library with MATLAB and python wrappers}, journal = {Bioinformatics}, volume = {35}, @@ -44,7 +44,7 @@ type = {Journal Article} } @article{Cohen2018, - author = {Winter, M. and Mankowski, W. and Wait, E. and Hoz, E. Cardenas De La and Aguinaldo, A. and Cohen, and A. R.}, + author = {Winter, M. and Mankowski, W. and Wait, E. and Hoz, E. Cardenas De La and Aguinaldo, Andrew R. Cohen}, title = {Separating Touching Cells using Pixel Replicated Elliptical Shape Models}, journal = {IEEE Trans Medical Imaging}, volume = {38}, @@ -54,7 +54,7 @@ type = {Journal Article} } @article{Cohen2017, - author = {Apostolopoulou and Maria and Kiehl and R., Thomas and Winter and Mark and Hoz, Cardenas De La and Edgar and Boles and C., Nathan and Bjornsson and S., Christopher and Zuloaga and L., Kristen and Goderie and K., Susan and Wang and Yue and Cohen and R., Andrew and Temple and Sally}, + author = {Apostolopoulou and Maria and Kiehl and R., Thomas and Winter and Mark and Hoz, Cardenas De La and Edgar and Boles and C., Nathan and Bjornsson and S., Christopher and Zuloaga and L., Kristen and Goderie and K., Susan and Wang and Yue and Cohen, R., Andrew and Temple and Sally}, title = {Non-monotonic Changes in Progenitor Cell Behavior and Gene Expression during Aging of the Adult V-SVZ Neural Stem Cell Niche}, journal = {Stem Cell Reports}, volume = {9}, @@ -67,7 +67,7 @@ type = {Journal Article} } @article{Cohen2016, - author = {Joshi and R. and Mankowski and W. and Winter and M. and Saini and S., J. and Blenkinsop and A., T. and Stern and H., J. and Temple and S. and Cohen and R., A.}, + author = {Joshi and R. and Mankowski and W. and Winter and M. and Saini and S., J. and Blenkinsop and A., T. and Stern and H., J. and Temple and S. and Andrew R. Cohen}, title = {Automated Measurement of Cobblestone Morphology for Characterizing Stem Cell Derived Retinal Pigment Epithelial Cell Cultures}, journal = {J Ocul Pharmacol Ther}, volume = {32}, @@ -103,7 +103,7 @@ type = {Journal Article} } @article{Cohen2014, - author = {Chenouard and N. and Smal and I. and Chaumont and F. and Maška and M. and Sbalzarini and F., I. and Gong and Y. and Cardinale and J. and Carthel and C. and Coraluppi and S. and Winter and M. and Cohen and R., A. and Godinez and J., W. and Rohr and K. and Kalaidzidis and Y. and Liang and L. and Duncan and J. and Shen and H. and Xu and Y. and Magnusson and G., K. E. and Jaldén and J. and Blau and M., H. and Paul-Gilloteaux and P. and Roudot and P. and Kervrann and C. and Waharte and F. and Tinevez and Y., J. -. and Shorte and L., S. and Willemse and J. and Celler and K. and Wezel and P., G. and Dan and W., H. -. and Tsai and S., Y. -. and Solórzano, Ortiz de and C. and Olivo-Marin and C., J. -. and Meijering and E.}, + author = {Chenouard and N. and Smal and I. and Chaumont and F. and Maška and M. and Sbalzarini and F., I. and Gong and Y. and Cardinale and J. and Carthel and C. and Coraluppi and S. and Winter and M. and Andrew R. Cohen and Godinez and J., W. and Rohr and K. and Kalaidzidis and Y. and Liang and L. and Duncan and J. and Shen and H. and Xu and Y. and Magnusson and G., K. E. and Jaldén and J. and Blau and M., H. and Paul-Gilloteaux and P. and Roudot and P. and Kervrann and C. and Waharte and F. and Tinevez and Y., J. -. and Shorte and L., S. and Willemse and J. and Celler and K. and Wezel and P., G. and Dan and W., H. -. and Tsai and S., Y. -. and Solórzano, Ortiz de and C. and Olivo-Marin and C., J. -. and Meijering and E.}, title = {Objective comparison of particle tracking methods}, journal = {Nat. Methods}, volume = {11}, @@ -243,10 +243,10 @@ type = {Journal Article} } -@inproceedings{FLIF, +@article{FLIF, author = {Wuille, Jon Sneyers and Pieter}, title = {FLIF: Free lossless image format based on MANIAC compression}, - booktitle = {2016 IEEE International Conference on Image Processing (ICIP)}, - type = {Conference Proceedings} + journal = {IEEE International Conference on Image Processing (ICIP)}, + year = {2016}, + type = {Journal Article} } -