Commit f8bfb8cf authored by ac32's avatar ac32

updated matlabAlgorithms for intensity seg

parent 8bd4b087
......@@ -8,15 +8,11 @@
"channels":"[1]",
"note_1":" - minimumRadius_um: for ensemble, use [start,step,end] e.g. [2,0.1,4]",
"minimumRadius_um":"4",
"useCuda":"false",
"note_alpha":" - smaller alpha values lower segmentation threshold",
"alpha":"1.0",
"useCuda":"true",
"denoise": "true",
"note_NLM":"non-local means params (denoise==true): [h,search window,neighborhood,high-pass filter]",
"NLM":"[0.1,6,3,0]",
"isPhase":false,
"note_brightLevels":" - brightLevels is the base number of foreground groups, e.g. {2} for {bg,noise,fg}. leave blank for default",
"brightLevels":"",
"wellRadius":-1,
"note_2":" - bCytoplasmic to true for objects with fine processes to preserve",
"bCytoplasmic":false,
......@@ -24,10 +20,7 @@
"nCores":4,
"storeEnsemble":"true",
"note_4":"bCircular adds a bit more weight to circular segmentations (ensemble only)",
"bCircular":"false",
"note_5":"clonalMotionComp sets tracking costs by clusters of objects moving together",
"clonalMotionComp":"false"
"bCircular":"false"
},
"function":"+Segment.FrameSegment_texture.m",
"commandHost":"matlab"
......
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