From 17a57b0239cfce450815a36c50eb73ab96260fd5 Mon Sep 17 00:00:00 2001
From: ac_fx <arc334@drexel.edu>
Date: Mon, 13 Nov 2023 08:40:28 -0500
Subject: [PATCH] SSF channel_distance use SSF.loadImage
---
matlab/+SSF/channel_distances.m | 12 ++++++++----
1 file changed, 8 insertions(+), 4 deletions(-)
diff --git a/matlab/+SSF/channel_distances.m b/matlab/+SSF/channel_distances.m
index 557fc9d3..5fed5dbe 100644
--- a/matlab/+SSF/channel_distances.m
+++ b/matlab/+SSF/channel_distances.m
@@ -2,11 +2,15 @@
% ERK_CHANNEL = 1;
% AKT_CHANNEL = 2;
% VELOCITY_CHANNEL = 4;
-function res = channel_distances(flist,classList,channel1,channel2,clipLimits)
+function res = channel_distances(flist,classList,channel1,channel2,clipLimits,tClip)
res=table();
+if ~exist('tClip','var')
+ tClip = [];
+end
+
if ~exist('clipLimits','var') || isempty(clipLimits)
- clipLimits = SSF.getClipLimits(flist,[channel1,channel2]);
+ clipLimits = SSF.getClipLimits(flist,[channel1,channel2],0,tClip);
end
parfor ff = 1:length(flist)
@@ -15,8 +19,8 @@ parfor ff = 1:length(flist)
nr = table();
strDB = fullfile(flist(ff).folder,flist(ff).name);
- im1 = leversc.loadImage(strDB,1,channel1);
- im2= leversc.loadImage(strDB,1,channel2);
+ im1 = SSF.loadImage(strDB,channel1,0,tClip);
+ im2= SSF.loadImage(strDB,channel2,0,tClip);
im1 = SSF.quantize8(im1,clipLimits{ff,1});
im2 = SSF.quantize8(im2,clipLimits{ff,2});
--
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