This is the source code repository for the paper "Segmenting Touching Cells"

The manuscript is currently under review. This software is intended only for the selected reviewers to evaluate. It is not licensed for download or use.

After the manuscript is accepted the software will be released free and open source.

USAGE

+src/MATLAB/demoPR.m -- generic 2-D pixel replication example

+src/MATLAB/demoPR_3D.m -- includes 3-D ellipse generator. Uses same PixelReplicate.m as 2-D example, only the simulated ellipse generation is different.

+src/ImageJ -- ImageJ plugin.

+src/Python -- Python implementation.

+src/MATLAB/DistributionSampling -- a more efficient implementation (useful for larger connected components.

+src/PerformanceCharacterization -- quantitive comparison of different algorithms on simulated elllipse data.