From 092de48f754bc71a743e184d979fe596b06fecdf Mon Sep 17 00:00:00 2001
From: Eric Wait <eric@waitphoto.com>
Date: Sat, 20 Jan 2018 15:55:28 -0500
Subject: [PATCH] Making polygons will be more intelligent about 2D data
---
src/matlab/+D3d/+Polygon/Make.m | 19 +++++++++++++++++++
1 file changed, 19 insertions(+)
diff --git a/src/matlab/+D3d/+Polygon/Make.m b/src/matlab/+D3d/+Polygon/Make.m
index b25a70a..ab48fe6 100644
--- a/src/matlab/+D3d/+Polygon/Make.m
+++ b/src/matlab/+D3d/+Polygon/Make.m
@@ -25,6 +25,19 @@ if (~exist('quiet','var') || isempty(quiet))
quiet = false;
end
+if (size(pixelList_xy,2)==3)
+ is3D = true;
+else
+ % this is done because the view must be a 3D kymograph
+ frames = vertcat(...
+ repmat(frame-0.5,size(pixelList_xy,1),1),...
+ repmat(frame+0.5,size(pixelList_xy,1),1));
+ pixelList_xy = repmat(pixelList_xy,2,1);
+ pixelList_xy = horzcat(pixelList_xy,frames);
+ frame = 1;
+ is3D = false;
+end
+
%reductions = [1,1,1];
polygon = D3d.Polygon.MakeEmptyStruct();
@@ -65,6 +78,12 @@ end
% center the vert in the middle of the voxel
verts_xy = v_xy + 0.5;
+if (~is3D)
+ minVal = min(verts_xy(:,3));
+ minMask = verts_xy(:,3)==minVal;
+ verts_xy(minMask,3) = verts_xy(minMask,3) + 0.45;
+ verts_xy(~minMask,3) = verts_xy(~minMask,3) - 0.45;
+end
com = rp.Centroid + startPadded -1;
--
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