Skip to content

Explore projects

  • source code from Clark, B., et al., Generation of Rab-based transgenic lines for in vivo studies of endosome biology in zebrafish. Developmental Dynamics, 2011. Blob tracker!

    Updated
    Updated
  • source code for Algorithmic Information Theoretic Prediction and Discovery from Cohen et al., Computational prediction of neural progenitor cell fates, Nature Methods, 2010.

    Updated
    Updated
  • source code from E. Wait, et al., Visualization and Correction of Automated Segmentation, Tracking and Lineaging from 5-D Stem Cell Image Sequences. BMC Bioinformatics, 2014.

    Updated
    Updated
  • Updated
    Updated
  • source code from "Axonal transport analysis using Multitemporal Association Tracking." Int J Comput Biol Drug Des. 2012;5(1):35-48.

    Updated
    Updated
  • source code from A.R. Cohen, C. Bjornsson, S. Temple, G. Banker, and B. Roysam, "Automatic Summarization of Changes in Biological Image Sequences using Algorithmic Information Theory". IEEE TPAMI, 2009. 31(8)

    Updated
    Updated
  • source code for A.R.Cohen and P.M.B. Vitanyi, Normalized Compression Distance of Multisets with Applications, IEEE Transactions on Pattern Analysis and Machine Intelligence. 2014.

    Updated
    Updated
  • OpenSource / bzlib2

    bzip2 and libbzip2 License v1.0.6

    source code for static lib or dll bzip2 goes with the MultisetNCD, AITP and GapSpectral projects

    Updated
    Updated
  • Open source lineage editing and validation tools for analysis of proliferating cells in phase-contrast microscopy.

    Updated
    Updated
  • OpenSource / CloneView

    GNU General Public License v3.0 only

    CloneView HTML5 viewer for LEVER - source from M. Winter, et al.,Computational Image Analysis Reveals Intrinsic Multigenerational Differences Between Anterior and Posterior Cerebral Cortex Neural Progenitor Cells, Stem Cell Reports (2015)

    Updated
    Updated
  • This is the source code for a manuscript currently under review. After the manuscript is accepted, the code will be available open-source (GPL v2). Until then, the code should only be viewed or downloaded by reviewers or editors for evaluation

    Updated
    Updated
  • OpenSource / rpe

    GNU General Public License v3.0 only

    open source release for Joshi, et al., "Automated Measurement of Cobblestone Morphology for Characterizing Stem Cell-Derived Retinal Pigment Epithelial Cell Cultures", Journal of Occular Pharmacology and Therapeutics, In press, 2016.

    Updated
    Updated
  • OpenSource / PixelRep

    BSD 3-Clause "New" or "Revised" License

    source code for "Segmenting Touching Cells" manuscript is in review - code is NOT RELEASED FOR PUBLIC USE - this repository is only for use by selected reviewers code will be released free and open source when manuscript is accepted...

    Updated
    Updated
  • OpenSource / MBL2016

    BSD 2-Clause "Simplified" License
    Updated
    Updated
  • leverjs is the new new. it combines our previous LEVER and CloneView projects into a single set of software tools for working with live cell & tissue microscopy images.

    Updated
    Updated
  • helper functions for image read/write and import.

    Updated
    Updated
  • OpenSource / hydra-image-processor

    BSD 3-Clause "New" or "Revised" License

    Cuda Kernels with Mex wrapper to process 3-D images

    Updated
    Updated
  • Updated
  • OpenSource / NWD

    MIT License

    source code for 'Web Similarity', A. R. Cohen and P. M. B. Vitanyi. In review. Intended for review evaluation only. Not licensed for public use. Will be released free and open source on acceptance of manuscript.

    Updated
    Updated
  • OpenSource / ljsctc

    The Unlicense
    Updated
    Updated